Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04065 and BL00639
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_04065___mreD.1.5803.seq
# -bsequence dna-align/BL00639___mreD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04065___mreD-BL00639___mreD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04065___mreD-BL00639___mreD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04065___mreD
# 2: BL00639___mreD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 546
# Identity: 358/546 (65.6%)
# Similarity: 358/546 (65.6%)
# Gaps: 54/546 ( 9.9%)
# Score: 1132.0
#
#
#=======================================
BSNT_04065___ 1 GTGAAACGTTTCCTTCTCCCTTTCGTTATGATGCTTGTTT---TTTCTGC 47
||||||||.||||||||.||..||||.||||||.|||||| |.|||
BL00639___mre 1 GTGAAACGCTTCCTTCTTCCCGTCGTCATGATGTTTGTTTTAGTATCT-- 48
BSNT_04065___ 48 GGAAAGCATTTTTACAGATTTGGTGCATTTTCCTTTCGTTACAGATGACC 97
||.|||.|.|.|.|.|||||.||..|.||.|||||.||.||.||.||.|
BL00639___mre 49 -GACAGCGTCTATGCGGATTTTGTCAACTTGCCTTTTGTGACGGAAGAAC 97
BSNT_04065___ 98 AAGTGCTCGCCCCGCGTTTTTTGATGCTTGTATTGATATTCATGTCGGCT 147
|...||||..||||||||||.||.|||||||.||..|.||.|||.|||||
BL00639___mre 98 AGCAGCTCATCCCGCGTTTTCTGCTGCTTGTCTTAGTTTTTATGACGGCT 147
BSNT_04065___ 148 TTTATCAACCAAAAACAC-----GCGATGATTTACGGATTTATTTTTGGT 192
|.|.||||.|| .| ||.||.|..||.|||||||||||.||.
BL00639___mre 148 TATGTCAATCA-----GCCTTTTGCCATTACATATGGATTTATTTTCGGA 192
BSNT_04065___ 193 TTTCTATATGACATGAACTATACAAGTCTATTAGGCGTTTACATGTTTGG 242
.|..|||||||.||.||.||.||....||.|||||.||.||.||||||||
BL00639___mre 193 CTGTTATATGATATTAATTACACCGACCTTTTAGGTGTATATATGTTTGG 242
BSNT_04065___ 243 TTTTGCAGGGCTATGCTATTTGGCTTCAAAAGCGTTTAAAGTGTTACATA 292
||||||.||..|.||||||||..|.|||||||||||.|||||.||.||.|
BL00639___mre 243 TTTTGCCGGTATTTGCTATTTATCGTCAAAAGCGTTCAAAGTATTGCAGA 292
BSNT_04065___ 293 CAAACGCATTTGTAGTGATATTGATAGCAGTTCTGGCTGTCTGTCTGCTC 342
|||||||..|.||.||.||.||.||..|..|.||.||.||||||.|.||.
BL00639___mre 293 CAAACGCGCTGGTCGTCATTTTTATTTCGCTGCTCGCCGTCTGTGTTCTT 342
BSNT_04065___ 343 GAATTTTACGTATTCGGCATTCAGTCTTTGATTCATAAAGACATTATGAC 392
|||||||||..||..|||.|.|||....||||.|.|...||.||||||.|
BL00639___mre 343 GAATTTTACCAATATGGCGTGCAGATGCTGATACGTCCGGAAATTATGCC 392
BSNT_04065___ 393 GTTTAACGGATTTGTGCTTGACCGGTTTATACCGACAATTTTATTAAATA 442
|||..|...|||||||||.|.|.||.|..|.||.||..||
BL00639___mre 393 GTTCCATCAATTTGTGCTCGGCAGGCTCCTGCCCACGCTT---------- 432
BSNT_04065___ 443 TTGCAGCAGCTCTTATTC----TTG------TTCTGC-CATTT------- 474
||.||.| .| ||| |||||| |||||
BL00639___mre 433 --------GCGCTGA-ACGCCGTTGGCGGCCTTCTGCTCATTTACCCGTT 473
BSNT_04065___ 475 -AGATTGTTTTTTATGAGTCTAAAGAAAGAATTGAGAGATGAGTAA 519
|.||.||||||||..|||||.||||||||..||||..||||||||
BL00639___mre 474 CAAATGGTTTTTTACCAGTCTTAAGAAAGAGCTGAGGAATGAGTAA 519
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