Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04095 and BL00643
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:09
# Commandline: needle
# -asequence dna-align/BSNT_04095.1.5803.seq
# -bsequence dna-align/BL00643___ysxD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04095-BL00643___ysxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04095-BL00643___ysxD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04095
# 2: BL00643___ysxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 553
# Identity: 313/553 (56.6%)
# Similarity: 313/553 (56.6%)
# Gaps: 122/553 (22.1%)
# Score: 819.5
#
#
#=======================================
BSNT_04095 1 ATGAAACAAAAATCAATTTT-ATTCCCTTGTCTGCTGCTTGCCGCTTCTG 49
.|||||.|.|||||..|||| .||||.||| |||.||.|.||||.|.|||
BL00643___ysx 1 TTGAAAAAGAAATCTGTTTTGCTTCCATTG-CTGTTGATAGCCGTTGCTG 49
BSNT_04095 50 TATATGCATGGCTAGAAAGCGGCCAAGCCGAA-----CTGTTTTCAGGGC 94
|.||.||.|...| ||||.|..||||.| ||||||...||.|
BL00643___ysx 50 TCTACGCCTTTTT-----GCGGTCGGGCCGGATCAGCCTGTTTGACGGCC 94
BSNT_04095 95 AGGATCAATGGCCTGT---------TCTCCTCATGCTGTTAGGCGCAGC- 134
||||..|||||.|||| ||||.||...||| ||
BL00643___ysx 95 AGGAAGAATGGTCTGTACTTGCAGGTCTCGTCGGACTG---------GCT 135
BSNT_04095 135 CTTTGTATATCAAGGAAAAAAAGAAGCCGTTACACCCCATTTCTTCATCG 184
|||| |.|||||.|||.|.||.|||||||.|.|..||||||.|
BL00643___ysx 136 CTTT-TTTATCAGGGACAGAAGGAAGCCGATTCCGCCCATTCC------- 177
BSNT_04095 185 GTTTGC--TTCTCTT------CGGGATCGGC-----TTACACTTTTTTGC 221
||||| ..||||| .|.||||||| ||.|||.|||
BL00643___ysx 178 -TTTGCAGGGCTCTTAATGACAGCGATCGGCGTTTATTTCACATTT---- 222
BSNT_04095 222 CAAGCCGAAATGGG--TAT----GGTGGCCGGATGATTTTGAAATGCTCC 265
|||..|| ||| |..|..|||||||||||| .|.||.
BL00643___ysx 223 -------AAAGAGGACTATTTCAGCCGCGCGGATGATTTTG---CGGTCA 262
BSNT_04095 266 TCTTTATGAT-------------CGGCTTCTCACTTCTCGTTTCAGCCGT 302
||.|..|||| |.||||.||| ..||||||.||
BL00643___ysx 263 TCGTGCTGATCTTCGGTGCGGCGCTGCTTGTCA--AATCGTTTAAG---- 306
BSNT_04095 303 TCAAAAAAAAGAATATGTATATGAAGCTGTGTCGATGAT-----TTGTTT 347
|.||||||||||..|||||||..|.||..|||||| |.|
BL00643___ysx 307 ----ACAAAAGAATATCAATATGAAAGTCTGCTGATGATCGCGGTCG--- 349
BSNT_04095 348 TTCCCTGTTTTTGTACTTTTTCAAACAAATTATGGCATGGCTTGAGTCTG 397
||||.|.|.|.|||||||||...||||||...||.|||||..||||.|
BL00643___ysx 350 --CCCTCTATCTTTACTTTTTCCGGCAAATTGCCGCCTGGCTGAAGTCGG 397
BSNT_04095 398 CGCATATTCCAACAGCGCTTCTGAAGGAG--TATTGGCCGTTTGTCTTTA 445
.|.|||| |.|.|..||.|.||.||.|| |||||||||...|..||||
BL00643___ysx 398 TGAATAT--CGAGACGGCATATGTAGAAGCTTATTGGCCGGCCGCTTTTA 445
BSNT_04095 446 TTGGAATCAGTTTATTGTTATTATTGATAAAACGAAAAAAATCTATACGA 495
|.|...|.|||.|..|.||||||||..|||||.|||||.|.
BL00643___ysx 446 TCGCGGTTAGTCTGCTCTTATTATTCTTAAAAAGAAAATAG--------- 486
BSNT_04095 496 TAA 498
BL00643___ysx 486 --- 486
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