Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03446 and BL00661

See Amino acid alignment / Visit BSNT_03446 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:26
# Commandline: needle
#    -asequence dna-align/BSNT_03446___resA.1.5803.seq
#    -bsequence dna-align/BL00661___resA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03446___resA-BL00661___resA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03446___resA-BL00661___resA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03446___resA
# 2: BL00661___resA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 560
# Identity:     393/560 (70.2%)
# Similarity:   393/560 (70.2%)
# Gaps:          46/560 ( 8.2%)
# Score: 1336.0
# 
#
#=======================================

BSNT_03446___      1 ATGAAGAAAAAAAGGCGTTTATTCATTCGGACCGGCATCCTTCTCGTTTT     50
                        |.||||||||.||||||.|.|||||||||.||||||||.||.||   
BL00661___res      1 ---ATGAAAAAAAAGCGTTTTTACATTCGGACAGGCATCCTCCTTGT---     44

BSNT_03446___     51 AATCTGC-----GCACTCGGCTATACCATTTACAACGCTGTATTTGCCGG     95
                       .||||     ||.||.|||||.||..|.||||.|||.||.|||     
BL00661___res     45 --GCTGCTTGCAGCGCTTGGCTACACGCTGTACAGCGCCGTGTTT-----     87

BSNT_03446___     96 CAAA-----GAGAGTATATCCGAAGGGTCCGACGCACCGAATTTTGTC-C    139
                     ||||     ||||||.|..|.|..|||....|.||.|| .|||||.|| |
BL00661___res     88 CAAAACACGGAGAGTGTGGCGGTGGGGGAAAAAGCTCC-CATTTTTTCGC    136

BSNT_03446___    140 TTGAGGAT----ACGAATGGGAAACGTATCGAGCTCAGTGACTTAAAAGG    185
                     |.||||||    ||    ||.||.|||.||.|.||....||..|||||||
BL00661___res    137 TGGAGGATGTTGAC----GGCAACCGTCTCAAACTGGACGAACTAAAAGG    182

BSNT_03446___    186 GAAAGGTGTTTTTTTGAATTTCTGGGGTACATGGTGTGAACCGTGCAAAA    235
                     .|||||.||.|||||.||.||.|||||.||||||||.|||||.|||||||
BL00661___res    183 CAAAGGGGTATTTTTAAACTTTTGGGGAACATGGTGCGAACCATGCAAAA    232

BSNT_03446___    236 AAGAGTTTCCTTATATGGCAAACCAATATAAGCATTTTAA----AAGCCA    281
                     .|||.||||||||||||||.||.|||||.|||...|||||    |    |
BL00661___res    233 GAGAATTTCCTTATATGGCGAATCAATACAAGGTGTTTAAGGATA----A    278

BSNT_03446___    282 AGGTGTTGAAATTGTCGCTGTAAATGTTGGGGAGTCAAAGATAGCAGTAC    331
                     |||.||.|||||.|||||.||.|||||.||.||.||.||..|.||.|| |
BL00661___res    279 AGGGGTGGAAATCGTCGCCGTCAATGTCGGCGAATCGAACCTCGCCGT-C    327

BSNT_03446___    332 A-TAATTTTATGAAATCCTACGGAGTCAATTTCCCGGTTGTTCTGGATAC    380
                     | .||.|||||||||..|.||||.||||||||.||||||||.||.||||.
BL00661___res    328 AGAAACTTTATGAAAGACCACGGCGTCAATTTTCCGGTTGTGCTTGATAA    377

BSNT_03446___    381 AGATCGCCAAGTGCTTGATGCCTATGACGTATCTCCGCTTCCGACAACCT    430
                     |||..|.||.||.|||.|.||.|||||.||..|.|||||.|||||.||.|
BL00661___res    378 AGACAGGCAGGTCCTTAACGCATATGATGTCACACCGCTGCCGACCACGT    427

BSNT_03446___    431 TTTTGATCAATCCGGAAGGAAAAGTTGTCAAGGTGGTGACCGGCACTATG    480
                     ||||||||||.||.||.|||.|..||||||||||.|||||.|||...|||
BL00661___res    428 TTTTGATCAACCCTGACGGAGAGATTGTCAAGGTCGTGACGGGCGAGATG    477

BSNT_03446___    481 ACAGAAAGCATGATACACGAATATATGAATCTCATAAAACCCGGAGAGAC    530
                     ||||||.|.|||||.|||||.|||||||||.|.||.|||||   ||||..
BL00661___res    478 ACAGAACGGATGATCCACGATTATATGAATATGATCAAACC---AGAGGG    524

BSNT_03446___    531 TTCGGGATGA    540
                     .|||..||||
BL00661___res    525 ATCGTCATGA    534


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