Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03277 and BL00670

See Amino acid alignment / Visit BSNT_03277 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:56
# Commandline: needle
#    -asequence dna-align/BSNT_03277___ypdQ.1.5803.seq
#    -bsequence dna-align/BL00670___rnhA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03277___ypdQ-BL00670___rnhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03277___ypdQ-BL00670___rnhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03277___ypdQ
# 2: BL00670___rnhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 427
# Identity:     273/427 (63.9%)
# Similarity:   273/427 (63.9%)
# Gaps:          56/427 (13.1%)
# Score: 745.5
# 
#
#=======================================

BSNT_03277___      1 ATGCC--TACAGAAATATACGTAGACGGCGCAAGCGCTGGTAATCCCGGC     48
                     |||||  |..||...||||  |.|||||.||||||||.||..|||||||.
BL00670___rnh      1 ATGCCGGTTGAGGTGTATA--TTGACGGAGCAAGCGCCGGGGATCCCGGA     48

BSNT_03277___     49 CCTTCCGGTATCGGCATTTTTATCAAACATGAGG----GAATAGCAGAAT     94
                     ||.|||||..|.|||||||||||||||   ||.|    |||.| |.||.|
BL00670___rnh     49 CCGTCCGGACTTGGCATTTTTATCAAA---GACGGCCAGAAGA-CCGAGT     94

BSNT_03277___     95 CCTTCTCTATTCCAATCGG---AGTGCATACAAATCAGGAAGCGGAATTT    141
                     |||||||..||||...|||   |.||   |..||.||.|||||.|||||.
BL00670___rnh     95 CCTTCTCCCTTCCCGCCGGCTCACTG---AGCAACCATGAAGCAGAATTC    141

BSNT_03277___    142 CTTGCATTAATTGAAGGGATGAAGCTATGTGC--AACG------CGCGGG    183
                     .|.||..|.||.|||||.||||||||.||.||  ||||      | ||| 
BL00670___rnh    142 ATGGCGCTGATCGAAGGAATGAAGCTGTGCGCCGAACGAAACTAC-CGG-    189

BSNT_03277___    184 TATCAATCGGTTTCCTTTCGAACCGATTCAGATATTGTGGAACGCGCCAC    233
                          ||| |||||.|||||.||||||||..|.||.||.||.|||.|..|
BL00670___rnh    190 -----ATC-GTTTCGTTTCGGACCGATTCGCAGATCGTCGAGCGCACGGC    233

BSNT_03277___    234 TGAGCTT--GAAATGGTTAAAAATAAAACGTTTCAACCGT--TCGTAGAA    279
                     .||  ||  ||..|.||.||||||.|..| ||||||.|.|  || |.||.
BL00670___rnh    234 GGA--TTCGGAGTTTGTCAAAAATCAGGC-TTTCAAGCCTTATC-TGGAT    279

BSNT_03277___    280 GAAATCACCCGATTAAAAGCGGCATTCCCTCTTTTTTTCATCAAATGGAT    329
                     |..||||.|||.||||||..||..||...|.|.|||||.|||||.|||||
BL00670___rnh    280 GCTATCATCCGCTTAAAAAAGGATTTTGATTTATTTTTTATCAAGTGGAT    329

BSNT_03277___    330 ACCGGGCAAG-CAAAACCAAAAAGC------CGATCTTCTGGCAAAAGAA    372
                     .||....||| ||||.|    ||||      |.|.|||   ||.|||.||
BL00670___rnh    330 TCCTTCGAAGTCAAATC----AAGCGGCTGACAAGCTT---GCGAAAAAA    372

BSNT_03277___    373 GCGATTCGGCTGAATGAAAAGAATTAA    399
                     |||||...||||||..||....|.|||
BL00670___rnh    373 GCGATATTGCTGAACCAACCCGAGTAA    399


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.