Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03288 and BL00679
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_03288___pbuX.1.5803.seq
# -bsequence dna-align/BL00679___pbuX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03288___pbuX-BL00679___pbuX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03288___pbuX-BL00679___pbuX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03288___pbuX
# 2: BL00679___pbuX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1369
# Identity: 963/1369 (70.3%)
# Similarity: 963/1369 (70.3%)
# Gaps: 104/1369 ( 7.6%)
# Score: 3127.5
#
#
#=======================================
BSNT_03288___ 1 ATGAGAAATGGATTCGGCAAAACGCTGTCTTTAGGGATTCAGCATGTTCT 50
||||.|..|..|..|||.|||||..|.||.|||.|.||||||||.||.||
BL00679___pbu 1 ATGAAACTTACAGCCGGTAAAACTGTTTCATTAAGCATTCAGCACGTCCT 50
BSNT_03288___ 51 CGCCATGTATGCCGGCGCCATTGTCGTTCCTCTGATTGTCGGAAAAGCAA 100
.|||||||||||.||.|||.|||||||.||.|||||.|||||....||..
BL00679___pbu 51 TGCCATGTATGCAGGAGCCGTTGTCGTACCGCTGATCGTCGGCGGCGCTC 100
BSNT_03288___ 101 TGGGACTGA--CCGTCGAGCAGCTGACTTACTTAGTATCAATTGATATTT 148
|.||.|||| ||| |..||||||||.|||.|.|||||....||.||||
BL00679___pbu 101 TCGGTCTGACGCCG--GCTCAGCTGACATACCTTGTATCTGCCGACATTT 148
BSNT_03288___ 149 TTATGTGCGGTGTGGCTACACTTCTGCAAGTGTGGAGCAACCGATTTTTT 198
|.||||||||||||||.||.||.||||||||.||||..|||||.|||||.
BL00679___pbu 149 TGATGTGCGGTGTGGCGACGCTGCTGCAAGTTTGGAAAAACCGCTTTTTC 198
BSNT_03288___ 199 GGGATCGGGCTTCCGGTAGTGCTTGGATGTACCTTTACAGCTGTATCGCC 248
||.|||||..|.||.||.||..|.||.|||||.||.|||||.||.||.||
BL00679___pbu 199 GGTATCGGTTTGCCTGTTGTATTGGGGTGTACGTTCACAGCCGTTTCTCC 248
BSNT_03288___ 249 AATGATTGCGATTGGATCTGA-ATATGGGGTTTCAACAGTTTACGGCAGC 297
.||||||.||||.|..|| || ||||||..||.||.|..|.||.||.|||
BL00679___pbu 249 GATGATTTCGATCGCCTC-GACATATGGTATTCCAGCGATCTATGGAAGC 297
BSNT_03288___ 298 ATTATCGCTTCAGG------CATTCTTGTCATTCTTATTTCATTTTTCTT 341
||.||.| |||| .|||.|.|||| |.|||||.||||||||
BL00679___pbu 298 ATCATAG---CAGGTGGTGTGATTGTCGTCA---TCATTTCTTTTTTCTT 341
BSNT_03288___ 342 TGGAAAGCTCGTATCGTTTTTTCCGCCGGTCGTGACAGGCTCTGTTGTTA 391
.||||||||.||...||||||.||.||.||.||.|||||.|||||.||.|
BL00679___pbu 342 CGGAAAGCTTGTTAAGTTTTTCCCTCCCGTGGTCACAGGATCTGTCGTCA 391
BSNT_03288___ 392 CGATTATCGGTATTACACTGATGCCGGTTGCCATGAATAACATGGCCGGC 441
||.|.||||||||.||..||||.||.|||||.|||||.||||||||||||
BL00679___pbu 392 CGGTGATCGGTATCACCTTGATTCCCGTTGCGATGAACAACATGGCCGGC 441
BSNT_03288___ 442 GGAGAAGGAAGTGCA--GATTTCGGAGATCTCTCCAACCTTGTTCTTGCT 489
||.|||||.| ||| ||||||||.||.||.|||||.||||.|.|.|||
BL00679___pbu 442 GGTGAAGGCA--GCAGCGATTTCGGCGAGCTGTCCAATCTTGCTTTAGCT 489
BSNT_03288___ 490 TTTACCGTGTTGAGTA-TCATTGTACTTCTGTACCGTTTTACAAAAGGCT 538
|||.|||| ||.|.|| ||||.||.|||.|.||.|||||||||..|||.|
BL00679___pbu 490 TTTTCCGT-TTTACTAGTCATCGTCCTTTTATATCGTTTTACATCAGGAT 538
BSNT_03288___ 539 TTATCAAGTCCGTCTCGATTTTGATCGGTATTTTGATTGGCA-------C 581
||||||||||..|.||.|||||.||||| .|||| |.||| |
BL00679___pbu 539 TTATCAAGTCAATTTCCATTTTAATCGG---CTTGA-TCGCAGGAACAGC 584
BSNT_03288___ 582 CTTCATCGCT-TATTTTATGGGAAAAGTTCAATTTGATA-ATGTTTCGGA 629
|..|..|||| || |||||||||||| .||||.|.| |.||..|..|
BL00679___pbu 585 CGGCGCCGCTCTA----ATGGGAAAAGTT-GATTTTACAGAAGTCGCAAA 629
BSNT_03288___ 630 CGC-GGCAGTTGTTCAAATGATTCAGCCATTTTACTTCGGCGCGCCGTCT 678
||| |||.| .||.||.||||||||.||.|||||||||||||| ||.|.|
BL00679___pbu 630 CGCTGGCTG-GGTGCAGATGATTCATCCGTTTTACTTCGGCGC-CCCTGT 677
BSNT_03288___ 679 TTTCATGCAG---CGCCTATCATTACGATGTCCATCGT--TGCAATTGTC 723
||| ||.|| |.||.|||.|.|||||||||.|||| || ||.|||
BL00679___pbu 678 TTT--TGAAGTTACCCCGATCTTGACGATGTCCCTCGTGCTG--ATCGTC 723
BSNT_03288___ 724 AGCCTTGTGGAGTCAACTGGTGTTTACTTTGCTTTAGGTGACCTGACAAA 773
||||||||.|||||.||.||.||.||||||||.||.||.||..||||..|
BL00679___pbu 724 AGCCTTGTCGAGTCCACAGGCGTCTACTTTGCATTGGGCGATTTGACGGA 773
BSNT_03288___ 774 CCGCCGTTTGACAGAGAAAGATTTGTCTAAAGGCTATCGAGCTGAAGGAC 823
||||||..|||||||.||.|||||....|||||.|||||.||.|||||..
BL00679___pbu 774 CCGCCGCCTGACAGAAAAGGATTTAGGAAAAGGATATCGCGCCGAAGGGA 823
BSNT_03288___ 824 TGGCTGTGCTTCTGGGAGGTATTTTTAACGCTTTTCCTTACACGGCATTC 873
|.||.|||||..||||.||..||||.|||||.||||||||.|||||.|..
BL00679___pbu 824 TTGCCGTGCTGTTGGGCGGGGTTTTCAACGCCTTTCCTTATACGGCGTAT 873
BSNT_03288___ 874 TCTCAAAATGTCGGGCTTGTTCAGCTCACAGGGATCAAAAAAAATACAGT 923
||.|||||.|||||.||.||||||||.|||||..|.||.|||||.|..||
BL00679___pbu 874 TCGCAAAACGTCGGTCTCGTTCAGCTGACAGGAGTTAAGAAAAACAGCGT 923
BSNT_03288___ 924 CATTGTGGTCACAGGTGTGATCCTAATGGCATTT-----GGGCTGTTTCC 968
.||.|.|.|..|.||.| ||..|..||||| |||||||||||
BL00679___pbu 924 GATCGCGCTTGCCGGAG-----CTTTTCTCATTTTGTTGGGGCTGTTTCC 968
BSNT_03288___ 969 -AAAGATCGCTGCTTTCACGACCATTATTCC--ATCCGCTGTTTTGGGCG 1015
|||| .|||||||||.|||||.||.||||| |.| ||||..|.||||
BL00679___pbu 969 GAAAG-CCGCTGCTTTAACGACGATCATTCCTAAAC--CTGTGCTCGGCG 1015
BSNT_03288___ 1016 GTGCAATGGTGGCGATGTTTGGAATGGTGATTGCTTACGGAATTAAAATG 1065
|.||.|||||.||||||||.||.||||||||.||.|||||.||.||||||
BL00679___pbu 1016 GCGCTATGGTAGCGATGTTCGGCATGGTGATCGCCTACGGGATCAAAATG 1065
BSNT_03288___ 1066 CTCAGCCGCATTGATTTTGCGAAACAGGAAAATCTGCTGATTGTTGCCTG 1115
||.|||.|..|||||||.|..||.|||||.||..||.||||.||.||.||
BL00679___pbu 1066 CTGAGCAGGGTTGATTTCGGCAAGCAGGAGAACTTGTTGATCGTAGCGTG 1115
BSNT_03288___ 1116 CTCAGTGGGATTGGGGCTGGGTGTGACCGTTGTGCCGGATAT-TTTCAAA 1164
.|||.|.|||.|.||.||.||.|||||.|||||.|||.|.|| |||||||
BL00679___pbu 1116 TTCAATCGGAATCGGCCTCGGCGTGACGGTTGTACCGCAAATGTTTCAAA 1165
BSNT_03288___ 1165 CAGCTTCC-GAGTGCCTTAACGCTGCTTACAACGAATGGCATTGTGGCGG 1213
|.||||| || .|||.|.|.|||..|.|||..|||.||.|||||.||||
BL00679___pbu 1166 -ACCTTCCTGA-CGCCGTCAAGCTTTTGACAGAGAACGGAATTGTTGCGG 1213
BSNT_03288___ 1214 GCAGCTTTACTG-CAGTCGTCTTAAAT------------ATTGTATATAA 1250
|.||||||||.| ||.|| ||||.||| ||| .|| .
BL00679___pbu 1214 GAAGCTTTACCGCCATTC-TCTTGAATGCGATCTTTCACATT---CAT-C 1258
BSNT_03288___ 1251 CGTTTTTTC-TAAAGCTAAAAAATCAGAACAAGAAGCTGACCTC-GCTGA 1298
||||||.|| |.|.|||.||.|..|.| |||.||.| || ||||
BL00679___pbu 1259 CGTTTTCTCGTCATGCTGAACAGCCTG---AAGCAGTT----TCTGCTG- 1300
BSNT_03288___ 1299 ACAAAAAACAGCAGTCTAA 1317
|.|||.|.||.||.|||
BL00679___pbu 1301 --AGAAATCTGCCGTTTAA 1317
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