Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02079 and BL00688

See Amino acid alignment / Visit BSNT_02079 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:33
# Commandline: needle
#    -asequence dna-align/BSNT_02079___yjlA.1.5803.seq
#    -bsequence dna-align/BL00688___yjlA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02079___yjlA-BL00688___yjlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02079___yjlA-BL00688___yjlA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02079___yjlA
# 2: BL00688___yjlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1097
# Identity:     635/1097 (57.9%)
# Similarity:   635/1097 (57.9%)
# Gaps:         250/1097 (22.8%)
# Score: 1658.5
# 
#
#=======================================

BSNT_02079___      1 ---------ATGAAAGCTAT------CGTTATCGGAATATTGGCTTCACT     35
                              ||      |||      ||||.|.|.|     |.||||   
BL00688___yjl      1 GTGAGGCCGAT------TATACTGGGCGTTTTTGCA-----GCCTTC---     36

BSNT_02079___     36 TTTTTTCGCCGTTACCTTTATATTAAACAGAGCGATGGAGTTATCAGGAG     85
                      |||||.||..||||.||..|.||||||||.|||||||||.|...|||.|
BL00688___yjl     37 -TTTTTTGCTTTTACATTCGTTTTAAACAGGGCGATGGAGCTTGAAGGGG     85

BSNT_02079___     86 GCAGCTGGCTTTGGAGCTCTTCGCTGCGCTTTATTTTTATGGTGCCGTTT    135
                     |.||||||.|.||||||.||||||||.|.|||||.||.||||.|||..||
BL00688___yjl     86 GAAGCTGGATCTGGAGCGCTTCGCTGAGATTTATCTTCATGGCGCCTCTT    135

BSNT_02079___    136 TTATGTTTGATTGTCATC----------------ATG----AGAGGGACA    165
                     ||||      |||.||||                |||    ||||     
BL00688___yjl    136 TTAT------TTGCCATCGTTTGGCTTAGGGGGAATGTGAAAGAG-----    174

BSNT_02079___    166 TTCACGCCTCTCTTACTAGAGATGAGGAAAAAGC------CGTTTTATTG    209
                              ||.||.|..||.||.|  |||||||      |.|    |||
BL00688___yjl    175 ---------CTTTTTCAGGAAATTA--AAAAAGCGCCGGGCAT----TTG    209

BSNT_02079___    210 GATCAAATGGAGCTTCGTCGGCTTCGTGCTTTTTTACGCGCCGATTACAT    259
                     |.|.|.|||||||.||.|||||||||..||.|||||.||||||.|....|
BL00688___yjl    210 GGTGAGATGGAGCATCATCGGCTTCGGTCTCTTTTATGCGCCGCTCTGTT    259

BSNT_02079___    260 TTGCGGCTGCATACGGTCCGGGGTGGCTCATAGCCGGAACCTGGCAAATT    309
                     |||||||.||.|||||.|||||.|||||.||.||.|||||.||||||||.
BL00688___yjl    260 TTGCGGCGGCTTACGGACCGGGCTGGCTGATCGCGGGAACATGGCAAATC    309

BSNT_02079___    310 ACAATTGTAGCCGGGGTGCTCTTATCTCCTTTGTTTTATG-------TCA    352
                     ||.||..|..||||....|||||..|.||..|.|||||||       |||
BL00688___yjl    310 ACGATCATTTCCGGTTCCCTCTTGGCGCCGCTTTTTTATGAAACCGTTCA    359

BSNT_02079___    353 AACAAGATATGCCGGGC-GGTCCGCAGTTCGTTC--------GCCAAAAG    393
                     |||||.|        .| |||||      |||.|        |.||||  
BL00688___yjl    360 AACAAAA--------ACAGGTCC------CGTACAGATAAGAGGCAAA--    393

BSNT_02079___    394 ATTCCCCT------GGTTTCAC-TTGGCACTTCCATGATCATCCTGATTG    436
                     |||  |||      ||..|||| .||     ||..|.|||||..|.||.|
BL00688___yjl    394 ATT--CCTTATAAGGGGCTCACGATG-----TCGTTCATCATTTTAATCG    436

BSNT_02079___    437 GAGCGGCTCTGATTC-AGCTTCAGCATGCAGAATCGCTTTCT----GGGA    481
                     |.|.|||.|||||.| ||| |.||||.||.|.|..|||||||    ..||
BL00688___yjl    437 GGGTGGCGCTGATGCAAGC-TGAGCACGCGGCACAGCTTTCTTTGCACGA    485

BSNT_02079___    482 GGATGCTGCTTTTCAGTGTGC----TGCCGGTTGTCATTGCGGCT---TT    524
                      ||||||||       |||||    .|||||||.| |||  ||||   ||
BL00688___yjl    486 -GATGCTGC-------TGTGCATCGCGCCGGTTAT-ATT--GGCTTCATT    524

BSNT_02079___    525 TGCCTATCCGTTAGGAAACAGGAGAATGCTCGAAGAATACGGAGGCCGGC    574
                     |||.||||||.|.||.|||||.|.||||.|.||||..|.||..||.||.|
BL00688___yjl    525 TGCTTATCCGCTTGGGAACAGAAAAATGATGGAAGTTTGCGCCGGGCGCC    574

BSNT_02079___    575 TTGATACATTTCAGCGCGTGCTTGGAATGACATTGGCAAGCCTTCCATTC    624
                     |.|||.|.|.||||||.||..|.||.|||||..|||||||||||||.||.
BL00688___yjl    575 TCGATGCTTATCAGCGGGTATTGGGGATGACGCTGGCAAGCCTTCCGTTT    624

BSNT_02079___    625 TGGCTTATATTAGCAGCT-TAC-GGCTGG--TGGTCAGACG-GCCTTCCA    669
                     |||||.||..|..| ||| ||| ||||||  |.|.|||..| ||   |||
BL00688___yjl    625 TGGCTGATCCTCTC-GCTGTACGGGCTGGCATCGGCAGGTGCGC---CCA    670

BSNT_02079___    670 ACAG----CAAGCCAAACCGTTCAATCCTTTA----TCGTAGCCGTCAGC    711
                     .|.|    ||||.||     ||||.||    |    |.||.||.||....
BL00688___yjl    671 GCCGGGGACAAGTCA-----TTCAGTC----AGGATTGGTGGCTGTATTT    711

BSNT_02079___    712 TCAGGCATCAT-TGCGACGGTTTTATTTTTCTG-GGCCACTGATATGGTA    759
                     ||.||.|| || .|||||.||..|.||.|| || .||.||.|||.|.|||
BL00688___yjl    712 TCCGGAAT-ATGCGCGACTGTGCTGTTCTT-TGCCGCAACAGATCTTGTA    759

BSNT_02079___    760 AGAGACAATCCGCAAAAACTCGCAGCCGTTGAAGCCACTCAATCCGGTGA    809
                     |.||...||..||..|||.|.||.||.|||||.|||||.|||||...|||
BL00688___yjl    760 AAAGGGGATATGCGCAAATTAGCGGCTGTTGAGGCCACACAATCGTTTGA    809

BSNT_02079___    810 AGTGATTTTCGCGTTGC--TTGGTGAAATTGTTCTGCTGTCAGG--CGTT    855
                     ||||.|.||.|||  ||  .||||||||||.|..|.||.||..|  ||.|
BL00688___yjl    810 AGTGCTGTTTGCG--GCCGCTGGTGAAATTTTAATCCTATCGAGTCCGCT    857

BSNT_02079___    856 T-----TCCCATCTCTTTTATC--ATTTGCCGGT-TTGTTCATTATAATA    897
                     |     |.|||||||.|..|.|  |.|.||   | ||| |.|||||    
BL00688___yjl    858 TCCCGGTGCCATCTCATGGAGCGGAATGGC---TCTTG-TGATTAT----    899

BSNT_02079___    898 GCGGGGATGATGTT--ACATAC---CTTCGCTTC-ACAGCCG--------    933
                       .||.|||.||||  |||..|   |.|||..|| |.|||||        
BL00688___yjl    900 --CGGAATGGTGTTGAACAGCCATGCATCGAATCAAAAGCCGGCGGTTCA    947

BSNT_02079___    934 -AG-AAAACCGAAAAAG---AAAGCACAGTCAAATCTGACTGCTTAG    975
                      || |||.|.|.|||||   ||                         
BL00688___yjl    948 AAGTAAAGCTGCAAAAGCATAA-------------------------    969


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