Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03116 and BL00697

See Amino acid alignment / Visit BSNT_03116 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_03116___yocA.1.5803.seq
#    -bsequence dna-align/BL00697.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03116___yocA-BL00697.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03116___yocA-BL00697.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03116___yocA
# 2: BL00697
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 708
# Identity:     471/708 (66.5%)
# Similarity:   471/708 (66.5%)
# Gaps:          87/708 (12.3%)
# Score: 1474.0
# 
#
#=======================================

BSNT_03116___      1 GTGAAGAAAAAGAGAAAAGGCTGTTTCGCTGCTGCGGG--TTTTATGATG     48
                     .||||||||||||.|..|||.|||||.||.|..||.||  .|||.|.|| 
BL00697            1 TTGAAGAAAAAGAAATCAGGATGTTTAGCCGGAGCTGGCTGTTTGTCAT-     49

BSNT_03116___     49 ATTTTTGTCTTTGT--CATCGCCTCTTTTTTATTGGTCCTGCTTTTTTTC     96
                      |||||||.|||||  |||.| .||.||||..|||  ||..||       
BL00697           50 -TTTTTGTGTTTGTTCCATTG-ATCATTTTCTTTG--CCATCT-------     88

BSNT_03116___     97 AACCGGGATTTAG-TCAA--AAAA---CTTCCGATCGATACAAAAACGAT    140
                       ||||  |.|.| .|||  ||||   |||||..|.||.||..||.|.|.
BL00697           89 --CCGG--TCTGGAACAATTAAAATGGCTTCCTCTTGACACTGAATCTAA    134

BSNT_03116___    141 TGTTTTGGAACGTTTAACCGATTACAAACC-CTTGGTGGAAGAAGAGCTT    189
                     |.||.|.||..|.||||..||||||||.|| ||| ||.||||||||.||.
BL00697          135 TATTCTTGAGAGATTAAAAGATTACAAGCCTCTT-GTTGAAGAAGAACTC    183

BSNT_03116___    190 GAAAGCCAAGGACTCTCTAATTATACATC--ACTCATATTAGGCATGATG    237
                     ||.|..||.||  |||.|.|..|||||.|  .||..||||.|||||||||
BL00697          184 GATAAACAGGG--TCTTTCACAATACACCGGTCTTTTATTGGGCATGATG    231

BSNT_03116___    238 TATCAGGAGTCAAAAGGAAAAGGCAATGATCCCATGCAGTCCTCTGAATC    287
                     |||||.|||||||||||.|.||||..||||||.||||||||.||.|||||
BL00697          232 TATCAAGAGTCAAAAGGCAGAGGCGGTGATCCGATGCAGTCGTCGGAATC    281

BSNT_03116___    288 TCTGGGGTTAAAACGCAATGAGATAACAGACCCT-CAACTCAGTGTTAAA    336
                     |||.||..|.||.||.||||||||   .|||..| |||         ||.
BL00697          282 TCTCGGCATGAAGCGAAATGAGAT---TGACGATCCAA---------AAG    319

BSNT_03116___    337 CAAGGCATCAAG------------CAATTTACCCTCATGTA-CAAGACCG    373
                     ||| ||||.|||            ||.|||||..|.||||| |||.|  |
BL00697          320 CAA-GCATTAAGCAGGGTGTGCGCCATTTTACAGTAATGTATCAAAA--G    366

BSNT_03116___    374 GTA-AGGAAAAAGGCGTGGATTTGGATACCATTATTCAAAGCTACAACAT    422
                     |.| ||.||||||||||.|||.|.||.||.|||||.||||||||.||.||
BL00697          367 GGACAGAAAAAAGGCGTCGATATTGAAACGATTATCCAAAGCTATAATAT    416

BSNT_03116___    423 GGGGGCAGGTTACATTGATTTTGTAGCTGAACATGGAGGAACGCATACTG    472
                     ||||||.|||||.||.||.|.|||..|..||||.||.||||.|||..|||
BL00697          417 GGGGGCCGGTTATATCGACTATGTCTCAAAACACGGCGGAAAGCACTCTG    466

BSNT_03116___    473 AGGAATTGGCAAAACAATACTCCGAGCAGCAAGTCAAAAAAAATCCTGAT    522
                     ||.|..|||||||...||..|||||..|.|||||||||||.||.||.||.
BL00697          467 AGAAGCTGGCAAAGGCATTTTCCGAAGAACAAGTCAAAAAGAACCCCGAC    516

BSNT_03116___    523 CTGTATACTTGCGGGGGAAATGCGAAAAATTTCCGCTATCCGTATTGCTA    572
                     |||||.|.||||||.||..||.|.||.||||||||||||||.||||||||
BL00697          517 CTGTACAATTGCGGCGGGGATACAAACAATTTCCGCTATCCTTATTGCTA    566

BSNT_03116___    573 CGGTGATTATACGTATGCAGAAAAAGTAAAAGAAAAAACAAAAACTGTTG    622
                     |||.|||||..|.||..|.||||||||||..|||...|||||||..||.|
BL00697          567 CGGGGATTACTCTTACACGGAAAAAGTAATGGAACGCACAAAAAAAGTCG    616

BSNT_03116___    623 AAGAATCT-TTGCAGG-TTGCAACACTTGAAACCATGGAATCCAAGGCTC    670
                     |||||..| |.|.||| ||  ||||||||||  |||.||           
BL00697          617 AAGAACATATCGAAGGATT--AACACTTGAA--CATTGA-----------    651

BSNT_03116___    671 ATGAATAA    678
                             
BL00697          651 --------    651


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.