Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01010 and BL00700
See
Amino acid alignment /
Visit
BSNT_01010 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_01010___ydhR.1.5803.seq
# -bsequence dna-align/BL00700___ydhR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01010___ydhR-BL00700___ydhR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01010___ydhR-BL00700___ydhR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01010___ydhR
# 2: BL00700___ydhR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1002
# Identity: 570/1002 (56.9%)
# Similarity: 570/1002 (56.9%)
# Gaps: 243/1002 (24.3%)
# Score: 1526.0
#
#
#=======================================
BSNT_01010___ 1 ATG---CTTGGCGGT---ATTGAAGCAGGCGGCACAAAGGTTATTTGTGC 44
||| |.|..|||| ||.||||||||.|||||||||.||.|||||||
BL00700___ydh 1 ATGAAACATTACGGTGCAATAGAAGCAGGAGGCACAAAGTTTGTTTGTGC 50
BSNT_01010___ 45 TGTCGGTAAAGAAGATGGAACAATCATTGAC-------CGAATAGAATTC 87
.|||||.|.||||.|.|||..||||||.||| ||| ||
BL00700___ydh 51 AGTCGGAACAGAAAAGGGAGAAATCATAGACAGGCTGACGA-------TC 93
BSNT_01010___ 88 CCTACAAAGATGCCGGATGAAACGATAGAGAAAG-TGATTCAATATTTTC 136
||.||..|||.|||.||.||.||.||.| ||||| ||| .|.||.|.|||
BL00700___ydh 94 CCGACGGAGACGCCTGAAGAGACCATTG-GAAAGCTGA-CCGATTTCTTC 141
BSNT_01010___ 137 GCCAATTTTCA--TTACAGGCGATCGGCATCGGCTCCTTTGGCC------ 178
..|||.|.||| |.||| .|.||.||..|.|||||.|||||.|
BL00700___ydh 142 AGCAAGTATCAGCTCACA-TCAATGGGAGTGGGCTCTTTTGGACCTATAT 190
BSNT_01010___ 179 CCGTTGATAACGATAAA----ACCAGTCAAACATACGGTACCATTATGGC 224
||||||..||..||||| |..|...|.||||| ||||.|
BL00700___ydh 191 CCGTTGCAAAAAATAAAGAGGATTACGGATACATA----ACCAAT----- 231
BSNT_01010___ 225 CACGCCGAAAGCGGGCTGGA----GACACTACCCCTTT-TTGCAAACTGT 269
||.||||||...|.||||| | |||||.||| ||.|
BL00700___ydh 232 -ACCCCGAAATTAGCCTGGAAGGGG----TACCCGTTTATTCC------- 269
BSNT_01010___ 270 TAAGAACGAAATGAAA------------ATTCCAG--TCGGATTTAGTAC 305
||||.||.|| |||||.| ||| ||||..||
BL00700___ydh 270 ------CGAATTGGAAAAAAGGCTTGGCATTCCGGTTTCG--TTTACGAC 311
BSNT_01010___ 306 AGATGTCAACGCTGCGGCGCTGGGTG---------AATTCCTTTTCGGTG 346
.|||||.||||||||.|||||.||.| || ||.|
BL00700___ydh 312 TGATGTAAACGCTGCCGCGCTTGGAGAGCTGACGAAA---------GGAG 352
BSNT_01010___ 347 AAGCGAAGGGTCTCGACAGCTGCCTGTATATAACGATTGGTACTGGCATC 396
|.|||.|.||.||.||.||||||.|||||||.||..|.||.||.||.|||
BL00700___ydh 353 AGGCGCAAGGCCTGGAGAGCTGCTTGTATATCACAGTCGGCACAGGAATC 402
BSNT_01010___ 397 GGTGCGGGCGCAATTGTAGGGGGCAGGCTCCTTCAGGG---GCTGTCGCA 443
||.||.||.||.|||||.||.|||.|||||.|.|||.| ||| .||
BL00700___ydh 403 GGAGCAGGAGCGATTGTCGGCGGCCGGCTCGTACAGAGCACGCT---CCA 449
BSNT_01010___ 444 CCCAGAGATGGGCCA--TATTTAT--------ATCCGGAGGCACCCGGAT 483
.||.||.|||||.|| ||.|.|| |||||.|||
BL00700___ydh 450 TCCTGAAATGGGTCACCTACTCATTAGACGGCATCCGCAGG--------- 490
BSNT_01010___ 484 GACGCATAC----CAAGGGAAGTGTCCTTATCATGGAGATTGCTTTGAAG 529
|||| .||||.|..|||||.|||||....||.|||.||||||
BL00700___ydh 491 -----ATACGTTTGAAGGAATCTGTCCGTATCACAAGGACTGCCTTGAAG 535
BSNT_01010___ 530 GCTTGGCTTCCGGTCCCGCCATTGAAGCGCGCTGGGGAAAAAAAGCCGCG 579
|..||||.||.||.||.||..|||||..|||.|||||.|||||.|.|..|
BL00700___ydh 536 GGATGGCATCGGGCCCGGCGCTTGAAAAGCGATGGGGGAAAAAGGGCAAG 585
BSNT_01010___ 580 GATTT--------ATCAGGTATAGCACAAGTCTGGGAACTGGAAGGGTAC 621
||||| |..||| ||||.|||||.||.||||...||
BL00700___ydh 586 GATTTGGCTGAAAACGAGG--------AAGTTTGGGAGCTTGAAGCCGAC 627
BSNT_01010___ 622 TATATTGCCCAAGCACTGGCTCAGTATATTTTGATCCT-TGCACCTAAAA 670
|||.|.||.||.||.||....||.|||||.|||||.|| ||| |||.|||
BL00700___ydh 628 TATTTAGCACAGGCCCTCATGCAATATATCTTGATTCTGTGC-CCTGAAA 676
BSNT_01010___ 671 AAATCATTCTTGGCGGCGGCGTCATGCAACAGAAACAAGTGTT------- 713
|||||||..|.||||||||.||||||.|.|||.|.||..||||
BL00700___ydh 677 AAATCATCATGGGCGGCGGTGTCATGAAGCAGCAGCAGCTGTTCCCGCTG 726
BSNT_01010___ 714 -TTCTTATATCTATCAATATGTACCGAAAATCATGAACAACTACTTAGAT 762
|||..|.| ||..|| .|||||.|| .||||| .|||
BL00700___ydh 727 ATTCGCAAA------AAGCTG-GCCGAATAT-TTGAAC--------GGAT 760
BSNT_01010___ 763 TTTTCTGAATTGTCAGATGATAT--AAGTGATTATATTGTACCTCC---- 806
.|.|| ||..||.| ||||.| || ||.||.||.||.||.||
BL00700___ydh 761 ATGTC-GACCTGCC---TGATCTTGAA--GAATACATCGTGCCGCCGGGC 804
BSNT_01010___ 807 -------ACGTTTAGGCAGTAACGCCGGAATCATCGGCACGCTAGTTTTA 849
|||.|.|| |||||||.|||..||||.|.|||.
BL00700___ydh 805 CTTGGCGACGATCAG-----------GGAATCACCGGAGCGCTTGCTTTG 843
BSNT_01010___ 850 GCGCA-TCAGGCCTTACAAGCAGAGGCAGCATCCGGGGAGGTGCGATCAT 898
||.|| || |||| ||| |
BL00700___ydh 844 GCTCATTC---------------------CATC------GGT-------T 859
BSNT_01010___ 899 GA 900
||
BL00700___ydh 860 GA 861
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.