Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04981 and BL00701
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:10
# Commandline: needle
# -asequence dna-align/BSNT_04981___yvgN.1.5803.seq
# -bsequence dna-align/BL00701___yvgN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04981___yvgN-BL00701___yvgN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04981___yvgN-BL00701___yvgN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04981___yvgN
# 2: BL00701___yvgN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 860
# Identity: 602/860 (70.0%)
# Similarity: 602/860 (70.0%)
# Gaps: 97/860 (11.3%)
# Score: 2224.5
#
#
#=======================================
BSNT_04981___ 1 ------------------------------------------------AT 2
||
BL00701___yvg 1 ATGGTAAGCAGTTTAAAGGACACTGTGACATTACATAACGGTGTGAAAAT 50
BSNT_04981___ 3 GCCTTGGTTCGGTCTGGGTGTTTTTAAAGTAGAAAATGGTAATGAAG-CG 51
|||.|||||.||.||.||.|||||.|||||.|||.|.||.|...||| ||
BL00701___yvg 51 GCCATGGTTTGGACTTGGAGTTTTCAAAGTGGAAGAAGGCAGCCAAGTCG 100
BSNT_04981___ 52 ACTGAATCAGTGAAAGCGGCAATTAAAAATGGCTATCGCAGCATTGATAC 101
.||||||.||.|||||.||.||||||||.||.||.||.||||||||.||
BL00701___yvg 101 -TTGAATCTGTAAAAGCAGCCATTAAAAACGGATACCGGAGCATTGACAC 149
BSNT_04981___ 102 AGCAGCGATCTACAAAAATGAAGAAGGCGTTGGCATCGGGATTAAAGAAT 151
|||.||.|||||..||||||||||||||||.||||..||||||||.||||
BL00701___yvg 150 AGCCGCTATCTATCAAAATGAAGAAGGCGTCGGCAAAGGGATTAAGGAAT 199
BSNT_04981___ 152 CCGGTGTGGCAAGAGAAGAGCTCTTCATCACATCAAAAGTGTGGAATGAA 201
|.||.||..|..|.||||||||.||||||||.|||||.||.|||||....
BL00701___yvg 200 CAGGCGTTCCCCGCGAAGAGCTTTTCATCACGTCAAAGGTTTGGAACAGT 249
BSNT_04981___ 202 GAGCAAGGCTACGAAACAACGCTTGCTGCCTTTGA--AAAGAGTCTGGAA 249
||.||.||.||.||||.|||..|.||.||.||||| ||||..| |.|||
BL00701___yvg 250 GACCAGGGATATGAAAAAACATTGGCGGCTTTTGATGAAAGCCT-TCGAA 298
BSNT_04981___ 250 AGATT--GCAGCTTGATTACTTAGATTTATATTTGATCCACTGGCCTGGC 297
| |.| || |||||.|||.|.||||||||||||||.||.|||||.||.
BL00701___yvg 299 A-ACTCGGC--CTTGACTACCTTGATTTATATTTGATTCATTGGCCAGGA 345
BSNT_04981___ 298 AAAGATAAATATAAAGATACATGGCGCGCGCTTGAAAAGCTGTACAAAGA 347
|||||.||||||||||||||.||||||||.||||||||||||||||||||
BL00701___yvg 346 AAAGACAAATATAAAGATACGTGGCGCGCACTTGAAAAGCTGTACAAAGA 395
BSNT_04981___ 348 CGGCA-----AAATCCGCGCGATCGGCGTCAGCAACTTCCAAGTTCATCA 392
||||| ||| ||||||||.||||||||.|||.|.||.||.||
BL00701___yvg 396 CGGCAGAGTGAAA-----GCGATCGGAGTCAGCAATTTCAATGTCCACCA 440
BSNT_04981___ 393 TTTAGAAGAGC-TGTTGAAAGATGCTGAAATCAAACCGATGGTGAACCAA 441
|||.||| ||| |.|||.|||||||.|||||.|||||||||||.||.||.
BL00701___yvg 441 TTTGGAA-AGCTTATTGGAAGATGCGGAAATTAAACCGATGGTCAATCAG 489
BSNT_04981___ 442 GTTGAGTTTCACCCTCGCTTGACGCAAAAAGAATTAAGAGATTACTGCAA 491
|||||.||.||.||.|||.|.||.||.|..||..|.||.||.||||||||
BL00701___yvg 490 GTTGAATTCCATCCGCGCCTCACTCAGACTGAGCTTAGGGACTACTGCAA 539
BSNT_04981___ 492 AGCGCAAGGCATTCAGCTGGAAGCGTGGTCTCCGCTCATGCAGGGACAGC 541
...|||||||||||||.|||||||.|||||||||||||||||||||.|.|
BL00701___yvg 540 GAAGCAAGGCATTCAGGTGGAAGCATGGTCTCCGCTCATGCAGGGAAAAC 589
BSNT_04981___ 542 TTTTGGATAACGAAGTACTGACACAGATTGCTGAAAAACACAATAAATCT 591
|..|.|||.|..|.||.|||||..|.||.|||.|||||.||||.|||||.
BL00701___yvg 590 TCCTCGATGATCAGGTGCTGACTGACATCGCTAAAAAATACAACAAATCC 639
BSNT_04981___ 592 GTGGCTCAAGTGATTTTGCGCTGGGATCTGCAGCATGAAGTTGTAACCAT 641
||.||||||||.||..|||||||||||.||||..|||||||.||.|||||
BL00701___yvg 640 GTTGCTCAAGTCATCCTGCGCTGGGATTTGCAAAATGAAGTCGTCACCAT 689
BSNT_04981___ 642 TCCAAAATCCATTAAAGAACACCGTATCATCGAAAACGCTGATATTTTTG 691
|||.||.|||||.|||||||||||.||.||.|||||.||.||.|||||||
BL00701___yvg 690 TCCGAAGTCCATCAAAGAACACCGCATTATTGAAAATGCCGACATTTTTG 739
BSNT_04981___ 692 ATTTCGAATTGTCTCAAGAAGACATGGACAAAATTGACGCATTAAATAAA 741
||||.|||||.||....|||||..|.||.|||||..||||..|.||||||
BL00701___yvg 740 ATTTTGAATTATCGGCGGAAGATGTCGAAAAAATCAACGCTCTTAATAAA 789
BSNT_04981___ 742 GATGAGCGTGTCGGCCCAAATCCTG-----ATGAGCTTCTGTTTTAA--- 783
||||||||.|||||.||..||||.| ||| .||||
BL00701___yvg 790 GATGAGCGCGTCGGTCCGGATCCGGACACAATG---------GTTAACGG 830
BSNT_04981___ 783 ---------- 783
BL00701___yvg 831 ATTCGAATAA 840
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