Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04967 and BL00703
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:09
# Commandline: needle
# -asequence dna-align/BSNT_04967___fhuB.1.5803.seq
# -bsequence dna-align/BL00703___fhuB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04967___fhuB-BL00703___fhuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04967___fhuB-BL00703___fhuB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04967___fhuB
# 2: BL00703___fhuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1245
# Identity: 764/1245 (61.4%)
# Similarity: 764/1245 (61.4%)
# Gaps: 225/1245 (18.1%)
# Score: 2331.5
#
#
#=======================================
BSNT_04967___ 1 GTGATTATACCACTGCAAGTGCCGGTTGACACGATATTTTTGCAAATGCA 50
BL00703___fhu 0 -------------------------------------------------- 0
BSNT_04967___ 51 TTTTCATTTTTGTTCAAAACACTCTATTAAATCAGCTGAAAAAAGTGA-- 98
||||
BL00703___fhu 1 --------------------------------------------GTGAGC 6
BSNT_04967___ 99 --TATACTGAAACAGCAATTGATA-ATCATTATCAGTAACAGAAAGGAAG 145
| |||..|||| ||| |||| |||| |||.|...||
BL00703___fhu 7 TCT-TACAAAAAC--------ATACATCA-TATC---AACGGCGCGG--- 40
BSNT_04967___ 146 TACGGCAGTTGAGTCAACATAAAAATATACAGACTGCATCAGAAGAAATC 195
|.||||.| .||.||.| |.|.||||.| |||||..| ||
BL00703___fhu 41 -ATGGCACT--------GATGAAGA-ACAGAGACCG-ATCAGCCG---TC 76
BSNT_04967___ 196 CAAT-GGACGTCAAGGACATATGGCGCGGTCATCGTCCTTATTGCAGG-- 242
|..| ||| ||.||..|.|||| |.||.||
BL00703___fhu 77 CGCTCGGA-----------------GCTGTATTTGTCC---TGGCCGGCG 106
BSNT_04967___ 243 ---TCTATGC--CTGCTTTGCCTTGGCGCATTTTTATCCATATCCCTCGG 287
|| |||| ||||||| |||||||....|||||.||..|.|||||
BL00703___fhu 107 GAATC-ATGCTGCTGCTTT---TTGGCGCCGCATTATCGATTGCGCTCGG 152
BSNT_04967___ 288 TGCAGCGGATATTCA-TTTGCGCACTGTATGGGACGCCATTTTTTATTTC 336
|||.||.|||||..| .||| |.||.||.|||||||||||||||.||||.
BL00703___fhu 153 TGCGGCTGATATAAAGCTTG-GAACGGTTTGGGACGCCATTTTTCATTTT 201
BSNT_04967___ 337 AAGCCGACAAAGACATCTCACCAAATTATACATGATCTTCGGCTGCCGAG 386
.|..|||.|||.||..|.||.||||||||.||.||.||..|.|||||.||
BL00703___fhu 202 GACGCGAAAAATACGGCCCATCAAATTATTCAGGAACTCAGACTGCCAAG 251
BSNT_04967___ 387 AACGGCGGCTGCCGCGCTTGTAGGCGCATTGTTGGCAGTGTCGGGAGCAA 436
.||||....|||.||.|||||.|||||.|...||||.||.||.|||||..
BL00703___fhu 252 GACGGTAAGTGCGGCTCTTGTGGGCGCCTGCCTGGCGGTTTCCGGAGCCG 301
BSNT_04967___ 437 TCATGCAGGGGATGACGAGAAACCCT-TTGGCAGAGCCTTCG------AT 479
|.|||||||||||||||.||||.||| ||| |.||| ||
BL00703___fhu 302 TGATGCAGGGGATGACGCGAAATCCTCTTG-------CGTCGCCGGAAAT 344
BSNT_04967___ 480 TATGGGTGTGACATCA-GGCTCTGCGTTTGCGGTTTCGATTGCGTTTGCC 528
||||.|.||.|| .|| ||.||.||.||.||..||.|..||||||||||.
BL00703___fhu 345 TATGAGCGTCAC-GCACGGGTCAGCTTTCGCAATTGCTGTTGCGTTTGCT 393
BSNT_04967___ 529 TTTTTTCCCGGACTTTCTGCAATGGGGCTTGTGCTATGGTCCTTTGCGGG 578
||||||||.|||...||..|.||.|||||..||.|.|||||.|||||.||
BL00703___fhu 394 TTTTTTCCAGGAACCTCATCGATCGGGCTGATGATCTGGTCATTTGCCGG 443
BSNT_04967___ 579 AGC-------GGGGCTGGGGGCATCGACGGTAATGGGCATCGGCTTGTTT 621
.|| ||.|| |||||.| ||..|.||.|||||..|||||
BL00703___fhu 444 TGCCGCTCTTGGAGC--GGGGCTT-----GTTTTTGGAATCGGAATGTTT 486
BSNT_04967___ 622 TCAAGGGGCGGACTTACGCCTGTAAAGCTTGCTCTGGCGGGTACGGCAGT 671
||||..|||||.|||||||||||||||||.|||.||||.||||||||.||
BL00703___fhu 487 TCAAAAGGCGGTCTTACGCCTGTAAAGCTGGCTTTGGCCGGTACGGCTGT 536
BSNT_04967___ 672 ---TACTTATTTCTTTACCGGCATTTCAACTGCCATTGCAATTCGCTTTG 718
.|| .|||.|.|.||...||||.||...|||.||.||.|.|||||
BL00703___fhu 537 CGGCAC---GTTCCTGAGCGCTCTTTCTACGAGCATCGCGATCCACTTTG 583
BSNT_04967___ 719 ATGTCGCTCAGGATATCAGCTTTTGGTACGCAGGCGGGGTAGCGGGTGTG 768
||||.||.|..||..||||.||||||||.||.||.||.||.||.||...|
BL00703___fhu 584 ATGTGGCGCGCGACGTCAGTTTTTGGTATGCCGGAGGTGTCGCCGGCACG 633
BSNT_04967___ 769 AAATGGCCGGGGGTCCAGCTT----TTGTTTATTGCAGGGGCTG---TCG 811
||||||| .||||.| |||||.|||.|.|.|||.| |||
BL00703___fhu 634 AAATGGC-------TCAGCATTCAGTTGTTGATTCCGGCGGCAGCGCTCG 676
BSNT_04967___ 812 GTTTAACGCTTGCGTTTT--TCATCGCCCGGTCTGTGACAGTGTTGAGTC 859
||||..||.| |||||| ||||||||||.||..|.||.||..|.||.|
BL00703___fhu 677 GTTTGGCGGT--CGTTTTTGTCATCGCCCGTTCCATCACGGTTCTAAGCC 724
BSNT_04967___ 860 TCGGTGACGATCTGGCAAAAGGGCTTGGACAATATAC-ATCAG-CAGTGA 907
|.|||||.||.|||||.||||||||.||.|||||||| | || |.||.|
BL00703___fhu 725 TGGGTGAGGAGCTGGCGAAAGGGCTCGGTCAATATACGA--AGACGGTAA 772
BSNT_04967___ 908 AACTGGTGGGCATGCTTAT-TGTAGTAATTCTGACCGGAGCTGCGGTTTC 956
||..|.|.||||| |.|.| .||.||..|.|||||.||.||..|.||.||
BL00703___fhu 773 AAGCGATCGGCAT-CGTGTCCGTTGTTCTGCTGACGGGTGCCACTGTATC 821
BSNT_04967___ 957 CATTGCCGGCACCATTGCATTTATCGGGCTGATTATTCCGCATATTACCC 1006
|.|||||||..|.||.|..||||||||..||||.||||||||||||||||
BL00703___fhu 822 CGTTGCCGGTGCGATCGGTTTTATCGGATTGATCATTCCGCATATTACCC 871
BSNT_04967___ 1007 GTTTTTTGGTCGGTGTGGATTATCGGTGGATCATTCCTTGCTCGGCGGTG 1056
|.|||.|||||||.||.|||||.||.|||||||||||.|||||.||.|||
BL00703___fhu 872 GCTTTCTGGTCGGGGTTGATTACCGCTGGATCATTCCATGCTCAGCTGTG 921
BSNT_04967___ 1057 CTCGGTGCTGTTTTGCTTGTTTTTGCTGACATAGCGGCCAGACTCGTAAA 1106
||.||.||||||.|.||..|.|.|||.||.||.|||||.||.||.||.||
BL00703___fhu 922 CTTGGCGCTGTTCTTCTGATCTATGCGGATATTGCGGCAAGGCTGGTCAA 971
BSNT_04967___ 1107 TGCGCCCTTTGAGACGCCTGTCGGCGCGCTGACTTCTCTGATCGGCGTTC 1156
..||||.|||||.||.||||||||.||..|.|||.|.||..|||||||.|
BL00703___fhu 972 CCCGCCGTTTGAAACACCTGTCGGAGCAGTAACTGCGCTTGTCGGCGTAC 1021
BSNT_04967___ 1157 CCTT-TTTCTTTTATTTGGCACGTCGTGAAAGGAGAGGGCTGTAA 1200
|.|| |||| |.|||.||||.||..|.||||||||.||.||||||
BL00703___fhu 1022 CATTCTTTC-TCTATCTGGCCCGCAGGGAAAGGAGTGGACTGTAA 1065
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