Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02087 and BL00708
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:34
# Commandline: needle
# -asequence dna-align/BSNT_02087___uxaC.1.5803.seq
# -bsequence dna-align/BL00708___uxaC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02087___uxaC-BL00708___uxaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02087___uxaC-BL00708___uxaC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02087___uxaC
# 2: BL00708___uxaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1549
# Identity: 1002/1549 (64.7%)
# Similarity: 1002/1549 (64.7%)
# Gaps: 236/1549 (15.2%)
# Score: 3001.5
#
#
#=======================================
BSNT_02087___ 1 ATGAAAGACGGTGAGGACATGGAACCCTTCATG---GGCGAAAACTTTTT 47
|||| |.||.||..|| |.||| ||||
BL00708___uxa 1 ----------GTGA--------AGCCGTTTTTGAATGACGA-----TTTT 27
BSNT_02087___ 48 ATTGAAA--AATGAAACCGCTGTC---AGT-CTCTATCACAATTATGCGA 91
.||..|| |||||||| ||| ||| .|.||.||..|.|||||.|
BL00708___uxa 28 CTTTTAACGAATGAAAC----GTCGAAAGTGTTGTACCATCAGTATGCAA 73
BSNT_02087___ 92 AAGACATGCCAATTATTGATTACCACTGCCACTTAAGTCCGAAAGAAATC 141
|||..|||||.||.||.||.||||||||||||||.||.|||||.||.||.
BL00708___uxa 74 AAGGAATGCCGATCATCGACTACCACTGCCACTTGAGCCCGAAGGAGATT 123
BSNT_02087___ 142 TATGAAAATAGTACATTTCAAAACATCACGGAAGCCTGGTTGTATGGTGA 191
||.|||||.|..||.|||.|||||.|.||.||||..|||.|.||.|||||
BL00708___uxa 124 TACGAAAACAAAACGTTTAAAAACCTGACCGAAGTATGGCTCTACGGTGA 173
BSNT_02087___ 192 CCATTATAAATG--GCGCATCATGAGAGCCAATGGAAT---TGAGGAGAC 236
.||.||.||.|| |.||| |||||.||||||||||| .||.|||
BL00708___uxa 174 TCACTACAAGTGGAGAGCA--ATGAGGGCCAATGGAATATCCGAAGAG-- 219
BSNT_02087___ 237 ATACATCACCGGAGATGCGCCTGATGAGGAGAAATTTATGGCTTGGGCGA 286
|..||.||.|||||||||.|.||.|||||||||||.|..||.|||||.|
BL00708___uxa 220 -TTTATTACAGGAGATGCGTCAGACGAGGAGAAATTCAGCGCCTGGGCAA 268
BSNT_02087___ 287 AAACCGTGCCGATGGCGATTGGCAATCCGCTCTACAACTGGACTCACTTA 336
.|||.||.||||||.|||||||.||.||||||||..|.|||||.||.||.
BL00708___uxa 269 GAACGGTTCCGATGACGATTGGAAACCCGCTCTATCATTGGACCCATTTG 318
BSNT_02087___ 337 GAATTGCAGCGTTTTTTTGGCATTTATGA---GATT--TTAAACGAGAAG 381
||..||..|.|.|||||.|||||..|||| |.|| |.|||.|||
BL00708___uxa 319 GAGCTGAGGAGGTTTTTCGGCATCGATGACCGGCTTGATGAAAAGAG--- 365
BSNT_02087___ 382 TCCGGGCCGGCTATATGGAAACGGACAAATGAACTGCTCAAAGG--GGA- 428
||.||||..|||.|||.|.|||...||.||||.||| || |||
BL00708___uxa 366 --CGCGCCGCATATTTGGGAGCGGGTTAACGAACAGCT----GGCCGGAG 409
BSNT_02087___ 429 -AGGCTTCGGGGCAAGGGATTTAATCGTGAAATCAAA---TGTAAAGGTC 474
|||.|||||.||.||.||.||.||.|..|||||||| ||.||.|||
BL00708___uxa 410 GAGGGTTCGGCGCCAGAGACTTGATTGAAAAATCAAACGTTGAAACGGT- 458
BSNT_02087___ 475 GTGTGT-ACAACAGATGACCCTGTTGATTCTCTTGAATACCATCTATTAT 523
||| ||.|||||||||||....||...|||||||||.|||.||
BL00708___uxa 459 ---TGTCACGACAGATGACCCCACAGACAGTCTTGAATATCATGTA---- 501
BSNT_02087___ 524 TAA---GAGAAGACAAAGACTTTCCTGTCAGCGTGCTGCCTGGATTTCGG 570
|| || ||||..||||||||..|||.|||||..|.|||||||||.||
BL00708___uxa 502 -AAGCTGA-AAGATGAAGACTTTAATGTAAGCGTTTTACCTGGATTTAGG 549
BSNT_02087___ 571 CCGGATAAAG-GACTTGAGATCAATCGTGAAGGCTTTCCTGAGTGGGTG- 618
||.||.||.| || |.||.|||||||..||.||.|||.|.|..||||||
BL00708___uxa 550 CCAGACAAGGCGA-TGGAAATCAATCAAGAGGGTTTTGCCGCCTGGGTGA 598
BSNT_02087___ 619 ------------CAG---GCGCT-TGAAGATGCCGCCGCCATATCGATTA 652
||| |||.| ||||| |||.|||.|
BL00708___uxa 599 GAAAGCTTGAAACAGCTAGCGGTATGAAG-----------ATAGCGAAT- 636
BSNT_02087___ 653 CAACCTATGATGAGTTTTTAAAGGCG-TTGGAAAAAC-GAGTGCGA-TTC 699
|||||.||.|||||.||.||| || |||||| ||.| .|| ||.
BL00708___uxa 637 -----TATGACGATTTTTTGAAAGCGCTT--AAAAACAGAAT-TGACTTT 678
BSNT_02087___ 700 TTCCACTCAGCCGGCGG-CAGAGTTTCTGATCACGCGATAGATTCAATGG 748
|||||...|||.||||| |.|| |.||.|||||.||.||..||..||||.
BL00708___uxa 679 TTCCATGAAGCAGGCGGACGGA-TATCGGATCATGCCATCAATCAAATGA 727
BSNT_02087___ 749 TATTTGCCGAAACAACAAAAGAAGA-AGC----TG-GACGGATTTTTTC- 791
|.|...|.||||| |||.|| ||| || |.|.|||||||.|
BL00708___uxa 728 TGTACACGGAAAC------AGATGAGAGCGAAGTGCGCCCGATTTTTGCA 771
BSNT_02087___ 792 -------TGACAGATTACAAGGAACAGAGGTT--TCTGAGGAAGCTGAGA 832
||| ||..|||| ||.|..| .|||||||| |||.
BL00708___uxa 772 AAGGTGATGA------ACGGGGAA-AGCGCCTCGCCTGAGGAA---GAGT 811
BSNT_02087___ 833 AGAAATTTAAGACATATACGCTT-CAGTTTCTT-------TGCGGTTTGT 874
..|||||.||..|.|..|| ||| ||.||| || ||| |
BL00708___uxa 812 GCAAATTCAAATCCTTGAC-CTTGCACTTT-TTGGGAACATGC------T 853
BSNT_02087___ 875 ATGCGGAGCTCGATTGGGCGATGCAGTTTCATATCAACGCTTTAAGAAAC 924
||||||||...|..||||||||||||.|.||.||.|||||..|..|.|||
BL00708___uxa 854 ATGCGGAGAAGGGCTGGGCGATGCAGCTCCACATTAACGCCCTCCGCAAC 903
BSNT_02087___ 925 ACGAATACA-----AAAATGAT----GAAAAGGCTCGGACCTGATACAGG 965
| ||| |||||| | ||| ||||||.||||||||.||
BL00708___uxa 904 A-----ACAGCAGCAAAATG-TACCGGAA---GCTCGGGCCTGATACGGG 944
BSNT_02087___ 966 CTATGATTCTATGAACGATGAAGAAATTGCTAAGCCTTTATACAAGC-TT 1014
.||||||.|.||.||.|||.|.||.||.||.||||||||.|.| ||| ||
BL00708___uxa 945 ATATGATGCGATTAATGATCAGGATATCGCAAAGCCTTTGTGC-AGCTTT 993
BSNT_02087___ 1015 CTGAACTCAGTTGA--GATGAAGAACCAGCTGCCGAAAACGATTTTATAT 1062
||..|.||..|||| || .||||..| ||||||.||||||||.||.|||
BL00708___uxa 994 CTCGATTCTCTTGATCGA-AAAGATGC-GCTGCCAAAAACGATCTTGTAT 1041
BSNT_02087___ 1063 TCACTGAATCCAAACGATAACTATGTC---ATCGCCAGCAT-----GATC 1104
||..|.||.||....| ||.||||| ||..|.|||.| ||
BL00708___uxa 1042 TCTTTAAACCCGCGGG---ACAATGTCGTGATTTCAAGCCTTTGCGGA-- 1086
BSNT_02087___ 1105 AACAGTTTTCAGGACGGTATTACC-----CCGGGAAAAATACAATTCGGC 1149
||.||.|||||||| || |||||.|||||.||...|||.
BL00708___uxa 1087 ---AGCTTCCAGGACGG-----CCGGATACCGGGGAAAATCCAGCACGGT 1128
BSNT_02087___ 1150 ACAGCCTGGTGGTTTAACGATACTAAAGACGGAATGCTCGACCAAATGAA 1199
||.|||||||||||.||||||||.||||||||.||||||||.||||||||
BL00708___uxa 1129 ACCGCCTGGTGGTTCAACGATACGAAAGACGGCATGCTCGAACAAATGAA 1178
BSNT_02087___ 1200 AGCGTTATCAAATGTTGGCCTTTTCAGCCGTTTTATCGGCATGCTCACCG 1249
|.||.|..|.||..|.||.||.||.||||||||||||||.|||||.||.|
BL00708___uxa 1179 ATCGCTTGCCAACATCGGTCTATTGAGCCGTTTTATCGGTATGCTGACTG 1228
BSNT_02087___ 1250 ATTCCAGAAGCTTTCTTTCGTATACGCGCCACGAATATTTCAGGCGGATC 1299
||||..|.|||||||||||.||.||..|.|||||||||||||||||..|.
BL00708___uxa 1229 ATTCGCGCAGCTTTCTTTCCTACACAAGACACGAATATTTCAGGCGCCTG 1278
BSNT_02087___ 1300 GTCTGCAATTTGATTGGAGAATGGGTGGAAAACGGCGAAGTGCCGCGCGA 1349
.|||||.||.|.||.||...||||||.||.||||||||||.||||...||
BL00708___uxa 1279 CTCTGCGATGTTATCGGCACATGGGTTGAGAACGGCGAAGCGCCGGATGA 1328
BSNT_02087___ 1350 TATGGAGCTTCTGGGAAGCATCGTTCAGGGGATTTGCTATGACAATGCGA 1399
|||.||.||.|||||..|.|||||..|.|||||.|||||.||.|||||.|
BL00708___uxa 1329 TATCGAACTGCTGGGCCGGATCGTAAAAGGGATCTGCTACGAAAATGCAA 1378
BSNT_02087___ 1400 AACACTACTTTCAATTTCAAGAAGAGAAAGCAAACGTGTAA-------- 1440
|||||||.||.||.||| ||||.||||| |.|||.|.|
BL00708___uxa 1379 AACACTATTTCCAGTTT---GAAGTGAAAG--ATCGTTTGAAAGCTTAG 1422
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