Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02098 and BL00711

See Amino acid alignment / Visit BSNT_02098 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:35
# Commandline: needle
#    -asequence dna-align/BSNT_02098___uxaB.1.5803.seq
#    -bsequence dna-align/BL00711___uxaB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02098___uxaB-BL00711___uxaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02098___uxaB-BL00711___uxaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02098___uxaB
# 2: BL00711___uxaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1645
# Identity:     935/1645 (56.8%)
# Similarity:   935/1645 (56.8%)
# Gaps:         377/1645 (22.9%)
# Score: 2216.5
# 
#
#=======================================

BSNT_02098___      1 ATGCAGAAACTGAATAAA-----AATGTGTA---CGATCACTATACTCGG     42
                     |||.|||..|||...|||     ||.||.||   |||.|        || 
BL00711___uxa      1 ATGGAGAGGCTGTCCAAACGGATAAGGTCTAAGCCGAGC--------CG-     41

BSNT_02098___     43 TATCCAGAAAAAATTCTCCAATTCGGAGAAGGAAACTTTCTTCGGGGATT     92
                       .||.|||...|||.|.|||.||||.|||||.||||||.|..||||.||
BL00711___uxa     42 --CCCCGAACGGATTTTGCAAATCGGGGAAGGTAACTTTATGAGGGGGTT     89

BSNT_02098___     93 TGTTGATTGGCAGATTGATCAATTGAATCAACACACTGATTTTAATGGGA    142
                     |.||||.|||||||||.||..|||||||.||.|.||.||||||||.||.|
BL00711___uxa     90 TATTGACTGGCAGATTCATAGATTGAATGAAGAAACCGATTTTAACGGCA    139

BSNT_02098___    143 G---------CGTGGCAGTTGTCC-AGCCAAGAGGCTCAGAAAAAATCAA    182
                     |         ||||.|     ||| .|||  |.||.||||        .|
BL00711___uxa    140 GTGCCGTCGTCGTGCC-----TCCGCGCC--GCGGTTCAG--------TA    174

BSNT_02098___    183 ACG---ATTAAATCAGCAAGATGGATTATATACGCTTTTTTTACAAGGAA    229
                     |||   .||.|| .|.||.|||||..|.||.|||||||.|.|..||||..
BL00711___uxa    175 ACGGCCTTTCAA-GAACAGGATGGGCTTTACACGCTTTATCTTGAAGGTT    223

BSNT_02098___    230 T----GAAAGAC-GGAGAAGCCGTAAACGA----GCATATGATTATCAAC    270
                     |    |||.||| ||||     ||...|||    || |.|.|||| ||  
BL00711___uxa    224 TCCGGGAAGGACGGGAG-----GTTCGCGATTCTGC-TGTCATTA-CA--    264

BSNT_02098___    271 TCAATCAGCCGGG---------GAATTGACCTGTTTTCTGATTATGAAGC    311
                     |||||||||.|.|         |...|||.|         |||||||.|.
BL00711___uxa    265 TCAATCAGCAGAGTCGTCAGCAGCTATGAGC---------ATTATGATGA    305

BSNT_02098___    312 ATACAAAGAATTGGC--ATCAAGCGAAAGGCTT--CGGTTTATTATCTCC    357
                     ||..|..||..||||  |||...|    ||.||  ||||||.|..|.||.
BL00711___uxa    306 ATTTATGGAGCTGGCCGATCTGCC----GGATTTGCGGTTTGTATTTTCA    351

BSNT_02098___    358 AACACCACTGAGGCTGGGAT--TGTATGTGAT-GAAAAAGATCGTTTAGA    404
                     ||.||.||.|||||.||.||  |.|||   || ||..||||.|||.|...
BL00711___uxa    352 AATACGACAGAGGCCGGCATCATTTAT---ATCGAGGAAGACCGTCTGTC    398

BSNT_02098___    405 GGATAGGCCGCAAAAAACATTCCCTGGGAAATTAACTGCATTTCTCTACT    454
                     .||..|.|||||.||||..|..||.|||||..|.||||||.||.|.|||.
BL00711___uxa    399 CGACCGTCCGCAGAAAAGCTATCCAGGGAAGCTGACTGCACTTTTATACA    448

BSNT_02098___    455 TCCGCTTTCA-GGCTTTTAAAGGAGATCAGACAAAAGGGTGTG----TCC    499
                     ..|| .|.|| |.|||||.||||| |.|||..||||.|||.||    |||
BL00711___uxa    449 GACG-ATACATGACTTTTCAAGGA-AGCAGGGAAAAAGGTCTGGTGATCC    496

BSNT_02098___    500 TAATCCCATGTGAACTGATTGAGAACAACGGCGAAAA-GCTGAAGGAAAC    548
                        ||||.|||||.|||.|||||.|.||||| ||||| .|||||.||   
BL00711___uxa    497 ---TCCCGTGTGAGCTGCTTGAGGATAACGG-GAAAATACTGAAAGA---    539

BSNT_02098___    549 GGTTCTTCATTATGCAGGTCT----------GTGGAAGCTGGAGGAAGGA    588
                            ||||.|||.|..||          ||||..|||.||..||||.
BL00711___uxa    540 -------CATTGTGCTGCGCTATACAAACGCGTGGGCGCTTGAACAAGGG    582

BSNT_02098___    589 TTTACACAGTGGATTCATGAGGCCAATACATTTTGTAATA-GTTTAGTAG    637
                     ||.|...|.|||.||.|.|||||.||....||.||.|||| |.|| ||.|
BL00711___uxa    583 TTCATCGATTGGCTTGAAGAGGCAAACGTGTTCTGCAATACGCTT-GTGG    631

BSNT_02098___    638 ACCGGATTGTTCCGGGTTTTCCCG--------TCGACA---GCATTGATG    676
                     ||.||||.||.||||| .||||||        |..|||   || ||||.|
BL00711___uxa    632 ACAGGATCGTACCGGG-ATTCCCGAAAGAAAATGCACACCGGC-TTGAAG    679

BSNT_02098___    677 AGATCACGGCGGATCTTGGCTATCAGGATGATTTGATAGTTGTGGGAGAG    726
                     |      |||||   ..||||||||.|||...|||||.||...||..|||
BL00711___uxa    680 A------GGCGG---CCGGCTATCACGATTCCTTGATGGTGAAGGCGGAG    720

BSNT_02098___    727 CAATATTATTTATGGGTTATCGAGGGGCCTGATTGGATTGGAAAAGAACT    776
                     |..|||.||||.|..||.||.||.|||||..|.|||.||.||.|.||.||
BL00711___uxa    721 CCGTATCATTTGTTCGTGATTGAAGGGCCGAAATGGCTTCGAGACGAGCT    770

BSNT_02098___    777 TCC-CTT--TGCGGCTGCAGGGCTCCATACAAAGATCGT-CAGCGACCTC    822
                     ||| |||  ||.|   ||.||.||..||....||.|.|| ||| ||..|.
BL00711___uxa    771 TCCGCTTCATGAG---GCCGGTCTGAATGTCGAGTTTGTCCAG-GATGTG    816

BSNT_02098___    823 ACCCCATACCGGACTAA-AAAAGTAAGGATTTTAAATGGCGCTCATACAG    871
                     ||.||.|||.||| ||| ||||||.||.||||||||.|||||.|||||.|
BL00711___uxa    817 ACGCCGTACAGGA-TAAGAAAAGTGAGAATTTTAAACGGCGCCCATACCG    865

BSNT_02098___    872 CAATGACGCCAGTGGCTTTATTATAC-GGCTTAAAAACTGTTAG------    914
                     |.||||||||.||.|| |||||...| |||.|..|.||.|||.|      
BL00711___uxa    866 CGATGACGCCGGTCGC-TTATTTGGCAGGCCTTGAGACGGTTCGCGAAGC    914

BSNT_02098___    915 GGATGCTGTCGAGC--ATCCGGAAGTTGGGC-GATTTATAAGAGAGCTGA    961
                     ||.||..|.|||||  |||         ||| .||||.|.|.||||||||
BL00711___uxa    915 GGCTGAAGACGAGCTTATC---------GGCTCATTTGTGAAAGAGCTGA    955

BSNT_02098___    962 T-----------------TGACGA-CGAAATTCTTCCTGTT-------TT    986
                     |                 .||||| |||   |.|.||.|.|       ||
BL00711___uxa    956 TCCAGCGGGAGGTGCTCGAGACGATCGA---TATGCCCGATAGCGAGCTT   1002

BSNT_02098___    987 AAAAA-----TGGAAGGTCTTTCTCAGTATGCTGACGATGTGCTGAACCG   1031
                     .|.||     ||||||         || ||.||  ||         ||||
BL00711___uxa   1003 GACAACTACGTGGAAG---------AG-ATTCT--CG---------ACCG   1031

BSNT_02098___   1032 TTTTAAAAACCCGTATATTAAGCATTACCTGGAAAGC--------ATTGC   1073
                     .|||||||||||||   |||..|.|.||     ||||        |||.|
BL00711___uxa   1032 CTTTAAAAACCCGT---TTATCCGTCAC-----AAGCTGATCGATATTTC   1073

BSNT_02098___   1074 ATTGAGCTCCGTTTCCAAATTCAAAACGAGAAACCTGCCGAC-TCTTAA-   1121
                     .||.|..|||.||.|.|||||||||...|||||..||||  | |||||| 
BL00711___uxa   1074 CTTAAATTCCTTTGCAAAATTCAAAGTCAGAAATTTGCC--CGTCTTAAT   1121

BSNT_02098___   1122 GGAATATGCTGAAC-AAAAGGGACAGCTTCC----TGAACGCTTGGTGTT   1166
                     |||||||||.|||| ||.|||.| |.|||||    .||||    .||.||
BL00711___uxa   1122 GGAATATGCGGAACGAACAGGCA-AACTTCCGGCTCGAAC----CGTATT   1166

BSNT_02098___   1167 TTCTTTCAGCGCTCTT-CTGTATTTTTATCATAATAATGAGAC-------   1208
                     |.||||.||||| ||| .|.||||||||.|        |||.|       
BL00711___uxa   1167 TGCTTTAAGCGC-CTTAATTTATTTTTACC--------GAGGCCAACGGG   1207

BSNT_02098___   1209 ATTGCAGGATGATCCGGC------------------------AGTGCTTC   1234
                     ||.|  |||||||..|||                        .|||||..
BL00711___uxa   1208 ATGG--GGATGATGGGGCCATTCCGCTGTCTGACGACGATGAGGTGCTGG   1255

BSNT_02098___   1235 AATTTTTCAAAGAGGTTTGGTGTCA-GGAGGATGAC-GACAT-----GCT   1277
                     ..||..|||||..|.|.|||    | |||.|| ||| |||.|     .|.
BL00711___uxa   1256 CTTTCCTCAAACGGCTCTGG----ACGGAAGA-GACAGACGTTTCGAACA   1300

BSNT_02098___   1278 TCGGATTGCA---TCAAGAGTGTTAGGCGAACAGCGGCTGTGGGGGGCAG   1324
                     |||.|||.||   ||..|.||.|.|    ||.||    ||||||||..|.
BL00711___uxa   1301 TCGCATTCCATGTTCTTGGGTTTGA----AAAAG----TGTGGGGGCAAA   1342

BSNT_02098___   1325 ATCTCAATGAGATACC--GAAGCTGACTGATAGAGTC-GCTG----TTT-   1366
                     ||||.||.||.||.||  ||  .||||.||.| ||.| ||||    ||| 
BL00711___uxa   1343 ATCTGAACGACATGCCCGGA--TTGACGGACA-AGACGGCTGAATATTTA   1389

BSNT_02098___   1367 ----ACTTGAATCTTATTCATGAGCTGGGCATGCAGCGGGCTCTTG-AAC   1411
                         ||.||||.|         |...|||.|||..|..|||.||.| ||.
BL00711___uxa   1390 AGGGACATGAAAC---------AAACGGGAATGAGGAAGGCGCTGGAAAA   1430

BSNT_02098___   1412 AATACTGCATA--CAA-----------GAGGGAGAGGTACGTTGA   1443
                     |||..||.|.|  |||           |.||||.|.|||.     
BL00711___uxa   1431 AATGATGAAAAGCCAAATGGCTGAGCTGGGGGACATGTAA-----   1470


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