Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04937 and BL00723

See Amino acid alignment / Visit BSNT_04937 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:07
# Commandline: needle
#    -asequence dna-align/BSNT_04937___yvqK.1.5803.seq
#    -bsequence dna-align/BL00723___yvqK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04937___yvqK-BL00723___yvqK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04937___yvqK-BL00723___yvqK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04937___yvqK
# 2: BL00723___yvqK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 639
# Identity:     405/639 (63.4%)
# Similarity:   405/639 (63.4%)
# Gaps:         117/639 (18.3%)
# Score: 1128.0
# 
#
#=======================================

BSNT_04937___      1 ATGAAACTATATACAAAAACAGGCGATAAGGGACAAACGGGCTTAGTCGG     50
                     ||||||||.||||||||||||||||||..||||.|||||.|.|||.|.||
BL00723___yvq      1 ATGAAACTCTATACAAAAACAGGCGATCGGGGAAAAACGAGTTTAATTGG     50

BSNT_04937___     51 GGGCAGGACGGACAAGGA-CAGCCTGCGCGTCGAAAGC-TACGGCACGAT     98
                     .||.|||.|.||.||.|| || .||..|.|| |.|||| ||||||||..|
BL00723___yvq     51 CGGAAGGGCCGATAAAGATCA-TCTTAGAGT-GGAAGCGTACGGCACACT     98

BSNT_04937___     99 TGACG-AGCTTAACAGCTTTATCGGGCTTGCTTTG------------GCA    135
                     .||.| ||| .|||||.||.||||||||.|||..|            |||
BL00723___yvq     99 GGATGAAGC-AAACAGTTTCATCGGGCTGGCTCAGTCTTATTTAAAAGCA    147

BSNT_04937___    136 GA----GCTTTCCGGGCAGCTCGGCTTTGAAGA---TCTGACAGCCGAGC    178
                     ||    ||          |||   ||||.|.||   |.||.||   |||.
BL00723___yvq    148 GAAGAGGC----------GCT---CTTTCATGATATTTTGTCA---GAGT    181

BSNT_04937___    179 TG-CTGACTATCCAGCATGAGCTGTTTGACTGCGGAGGCGATCTGGC-AA    226
                     || |.| |.|||||||||||||||||.||||||||..|.|||.|||| .|
BL00723___yvq    182 TGACCG-CCATCCAGCATGAGCTGTTCGACTGCGGCAGTGATTTGGCGCA    230

BSNT_04937___    227 TCGTCA-----CAGAAAGAAAAGACTATAAACTAACGGAAGAATCTGT--    269
                     | ||||     |||.|||  |||.|   ||.||.|.||..|||||..|  
BL00723___yvq    231 T-GTCAATGTTCAGGAAG--AAGGC---AAGCTCAAGGCTGAATCAATCA    274

BSNT_04937___    270 ---TTCTTTTTTAGAAACACGCATTGATGCCTATACAGCAGAAGCGCCGG    316
                        |.|||     |||..|||.||||||||||||...|..|||||||||.
BL00723___yvq    275 CCATGCTT-----GAAGAACGAATTGATGCCTATGTCGAGGAAGCGCCGC    319

BSNT_04937___    317 AACTGAAGAAATTTATTCTTCCAGGCGGATCA-AAGGGTGCTTCGCTTCT    365
                     |.||||..||.|||||||||||.||||||.|| |||.| ||.||..||.|
BL00723___yvq    320 AGCTGACCAAGTTTATTCTTCCGGGCGGAACAGAAGCG-GCATCATTTTT    368

BSNT_04937___    366 CCATATCGCACGCAC---CATTACAAGGCGGGCAGAACGAAGAG-TGGTG    411
                     .|||...||..|.||   |||.|.||   |.||.||||||| || |.||.
BL00723___yvq    369 GCATGCGGCGAGAACGGTCATCAGAA---GAGCTGAACGAA-AGATTGTC    414

BSNT_04937___    412 GC----GCTGATGAAATCGGAGGAGATTCATGAAAC------AGTGCTGC    451
                     ||    ||..|.|||    ||.||.||||      |      .|.|||||
BL00723___yvq    415 GCTTTGGCCAAAGAA----GAAGACATTC------CGCCGCTTGCGCTGC    454

BSNT_04937___    452 GTTATCTCAATCGTCTGTCCGATTATTTCTTTGCCGCCGCCCGGGTTGTA    501
                     ..||..||||.||.||||||||||||||.|||||.||.||.||..||||.
BL00723___yvq    455 CATACGTCAACCGGCTGTCCGATTATTTATTTGCGGCGGCGCGCATTGTC    504

BSNT_04937___    502 AATGCAAGAAGCGGTATTGG------CGATGTAGAATATGAAAGAAGTGC    545
                     ||| ||     |.||.|.||      .|||||.|||||||||.||||.||
BL00723___yvq    505 AAT-CA-----CCGTCTCGGGGAAGTGGATGTCGAATATGAACGAAGCGC    548

BSNT_04937___    546 CATTG-TGT-TTCGGGACCGAAACAGCAGTGAATCATAA    582
                        || ||| |||.||||  |||.|..|   ||||||.|
BL00723___yvq    549 ---TGATGTATTCCGGAC--AAAGAAAA---AATCATGA    579


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