Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00472 and BL00736

See Amino acid alignment / Visit BSNT_00472 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:06
# Commandline: needle
#    -asequence dna-align/BSNT_00472___ycbU.1.5803.seq
#    -bsequence dna-align/BL00736___ycbU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00472___ycbU-BL00736___ycbU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00472___ycbU-BL00736___ycbU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00472___ycbU
# 2: BL00736___ycbU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1290
# Identity:     718/1290 (55.7%)
# Similarity:   718/1290 (55.7%)
# Gaps:         342/1290 (26.5%)
# Score: 1739.0
# 
#
#=======================================

BSNT_00472___      1 ATGGAGCAT---TTGCCGCAGCAGTAT-CGTCATTTATTCCCAACCTTG-     45
                     |||.|||||   ||    |..||.|.| |||..|||||||||.|..||| 
BL00736___ycb      1 ATGAAGCATCCATT----CGACAATTTCCGTTCTTTATTCCCGAAATTGT     46

BSNT_00472___     46 CAGA-CGCATACGATG-----CTTGCCAGC-TGTTCTCAG-AGCGCATTG     87
                     |.|| |       |||     |||||| || ||||| |.| |||||||||
BL00736___ycb     47 CTGATC-------ATGTTCATCTTGCC-GCATGTTC-CGGAAGCGCATTG     87

BSNT_00472___     88 GCAGAGCCTGTATCAAGGGCGATCCAGGATTATCATGATAGCCTGCTGTA    137
                     ||...||||||..|.|..|||.||.|.||.|||||..|..||||    |.
BL00736___ycb     88 GCTCTGCCTGTTGCCAAAGCGGTCGATGAGTATCAGAACGGCCT----TT    133

BSNT_00472___    138 TAA----AGGGACGAACTGGAAAGAAGCGATTGAAAAAACAGAGTTTGCG    183
                     |||    .||..|..|||||||||.|....|.||.||.|..||   ||.|
BL00736___ycb    134 TAACAGCCGGTGCAGACTGGAAAGCACATCTCGACAAGATGGA---TGAG    180

BSNT_00472___    184 A-----GAAACGAGTTTGCAAAGCTGATCGGGGCTGAACCGGATGAAGTG    228
                     |     ||||  |.||.||...|||||||||.||||||...||.||..|.
BL00736___ycb    181 ACCAAGGAAA--AATTCGCCCGGCTGATCGGTGCTGAAAAAGAAGAGATA    228

BSNT_00472___    229 GCGATTGTGCCGTCAGTTTCTGATGCACTGGTTTCTGTAGCATCGTCCTT    278
                     ||..||.||||||||||.|||||.|||.|||...||||.||  ||     
BL00736___ycb    229 GCCGTTTTGCCGTCAGTATCTGACGCAGTGGCCGCTGTGGC--CG-----    271

BSNT_00472___    279 AACTGCATT---------------TGGAAAGAAG--CACGTTGTATATAC    311
                       |.|||.|               |.|||.|.||  |.|.||     .||
BL00736___ycb    272 --CCGCAATGCCGCAGCCACCCCGTCGAAGGCAGATCGCCTT-----CAC    314

BSNT_00472___    312 AGATATGGATTTTCCGGCGGT--GCCTCATGTTTGGCAGGCACACTCCGA    359
                     .|||||.||||||||.||.||  ||  ||..||||||..||.||      
BL00736___ycb    315 GGATATCGATTTTCCTGCTGTCGGC--CAAATTTGGCTTGCGCA------    356

BSNT_00472___    360 TTATACCGTATC--------CGTCATTCCATCAAT--------AGACGGC    393
                       |.||||..||        |.||||  |||||.|        |||.||.
BL00736___ycb    357 --AGACCGCTTCAAAGATCACCTCAT--CATCATTCAAAGCGAAGATGGG    402

BSNT_00472___    394 GTG-----CTGCCGCTTGAACAATATGAA----ACGCATATTTCGGATGA    434
                     .||     ||     |.||||||||.|||    |||    ||.|.|||.|
BL00736___ycb    403 ATGATTGACT-----TGGAACAATACGAAAAAGACG----TTACCGATCA    443

BSNT_00472___    435 AACAGTACTGACGTGTGTTCCTCACGTTCATTATCGTGACGGCTAT----    480
                     .||..|..||||||||||.||.||            ||.|||||||    
BL00736___ycb    444 GACGCTCTTGACGTGTGTGCCCCA------------TGCCGGCTATCGGA    481

BSNT_00472___    481 ----GTT----CAGGATATAAAAGC-GATTGCCGAGATTTCTCA-GAGAA    520
                         |||    ||.||.|| ||||| |||||||||||||..||| .||||
BL00736___ycb    482 ACGGGTTTAAGCAAGACAT-AAAGCAGATTGCCGAGATTGTTCATCAGAA    530

BSNT_00472___    521 AGGG-CTCTTTATTGTTTGTAGATGCTTATCAATCAGCCGGGCATATTCC    569
                     |||| |.|||  ||.||.||.||.||.|||||..|.|||||.||.|||||
BL00736___ycb    531 AGGGTCGCTT--TTATTCGTCGACGCCTATCAGACTGCCGGCCACATTCC    578

BSNT_00472___    570 CATTGATGTGAAGGA-ATGGGGCGAA----GAAATGCTGGCAGCAGGCAC    614
                     .|||.||||.||.|| ||||     |    ||.||.||.||.||.||.||
BL00736___ycb    579 GATTCATGTCAAAGACATGG-----ATATCGACATCCTTGCGGCGGGGAC    623

BSNT_00472___    615 CCGGAAGTATTTGCTCGGCATACCGGGTGTGGCGTTTCTTTATGTGAGAA    664
                     .||.||.||..||||||||||.||.||....||.|||.|.|||.||| ||
BL00736___ycb    624 GCGCAAATACATGCTCGGCATTCCCGGAACAGCTTTTTTATATATGA-AA    672

BSNT_00472___    665 AG-GAGCTGGCTGACGCAC----TGAAGCCGAAAGCATCAGCTTGGTTCG    709
                     .| ||.||   |..||.||    || ||||.|||.|..|.|..|||||||
BL00736___ycb    673 CGCGAACT---TTGCGAACAATTTG-AGCCAAAAACGGCCGGCTGGTTCG    718

BSNT_00472___    710 GCAGAGAGAACG-GATTTG----AG---GGGGCTTATGCGAAAGACGCG-    750
                     |.|| |||..|| .|||||    ||   ..||||| ||||.|||..||| 
BL00736___ycb    719 GAAG-GAGCGCGCCATTTGCCTTAGATTCAGGCTT-TGCGGAAGGTGCGA    766

BSNT_00472___    751 --CGCCGTTTTC-AAACGGGCACCCCAGCTTTTATCAGCGTATACGCAGC    797
                       |||    ||| |..||||.||.||..|.|||||||||.||||.||.||
BL00736___ycb    767 AACGC----TTCGAGTCGGGGACACCGTCATTTATCAGCATATATGCGGC    812

BSNT_00472___    798 TGCAGCGGCTTTATCGCTGC----TGAATCATATTGGAGTTTCTCATACT    843
                     .|..|||||.||...|||||    ||||.|     ||||         |.
BL00736___ycb    813 AGACGCGGCATTGAAGCTGCTGCTTGAAGC-----GGAG---------CC    848

BSNT_00472___    844 CG---GGATCATGTGAAAACGATCTG--------TGCCG-ATGCAGTT--    879
                     ||   |||||    ||...|.|||||        |||.| ||.|..||  
BL00736___ycb    849 CGACAGGATC----GAGCCCTATCTGCGGCAGCTTGCGGCATTCTCTTTG    894

BSNT_00472___    880 CAATATGCCGCTGAAAAAGGCCTGCAGCTGGCGGCGGCACAAGGTGGGGG    929
                     |||||.|..||.||||||||||||.||.|        ||||.|       
BL00736___ycb    895 CAATACGGTGCGGAAAAAGGCCTGAAGAT--------CACAGG-------    929

BSNT_00472___    930 TCAGCCA----GGTATGGTTGCGATCCGGGATGAGCGGGCATCGGAAACG    975
                       |.|||    .|||                        |||    |||.
BL00736___ycb    930 --ACCCAACACCGTA------------------------CAT----AACA    949

BSNT_00472___    976 G--------------CGGCGT-TGCTGAAGAA------------GAA---    995
                     |              |||.|| |||.||||||            |||   
BL00736___ycb    950 GAACAAGCCTGATCTCGGTGTATGCCGAAGAAGCCGCCCGTGTTGAATCC    999

BSNT_00472___    996 ----------AAAAG----TGATTTGCGCGCC-----GCGGGACAATGTG   1026
                               |||||    |.||     ||.|     |||..||||.||.
BL00736___ycb   1000 CTCTTGCGTGAAAAGCATATCAT-----CGTCTCAAAGCGAAACAACGTC   1044

BSNT_00472___   1027 ATCCGTCTCGCTCCCCATTTTTATAATACGAAGGAGGACATGCGG-CGCG   1075
                     ||..|..|.||.||.||||||||.|||||.||||||||.|| ||| ...|
BL00736___ycb   1045 ATAAGAATAGCCCCGCATTTTTACAATACAAAGGAGGAAAT-CGGATTTG   1093

BSNT_00472___   1076 CGATTGATGAGATCGCGGCGAAAACGATCCACAAG--TAA   1113
                     .|||.||||||||||||||  ||.||      .||  |||
BL00736___ycb   1094 TGATGGATGAGATCGCGGC--AATCG------TAGGCTAA   1125


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