Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04975 and BL00739

See Amino acid alignment / Visit BSNT_04975 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:09
# Commandline: needle
#    -asequence dna-align/BSNT_04975___yvsG.1.5803.seq
#    -bsequence dna-align/BL00739___yvsG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04975___yvsG-BL00739___yvsG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04975___yvsG-BL00739___yvsG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04975___yvsG
# 2: BL00739___yvsG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 505
# Identity:     340/505 (67.3%)
# Similarity:   340/505 (67.3%)
# Gaps:          56/505 (11.1%)
# Score: 1134.0
# 
#
#=======================================

BSNT_04975___      1 ATGACAGGAAAAACACACATCATGGGAGGCATCGCTTCTTGTACGGCAGC     50
                     |||||||||||||||||||||||||||||..||||||||||||||||.||
BL00739___yvs      1 ATGACAGGAAAAACACACATCATGGGAGGGGTCGCTTCTTGTACGGCTGC     50

BSNT_04975___     51 GGCTTATTATTATGGATTTGATCCAGTGCTTATGGCTGCGTCAGGCGCGG    100
                     .|||||||.|||.||||.||||||.|||.|.|||.|.||.||.||||...
BL00739___yvs     51 TGCTTATTTTTACGGATATGATCCGGTGTTCATGACAGCCTCGGGCGTTA    100

BSNT_04975___    101 TTGGAGCATTAATACCCGATATCTGCCACACACAAAGCAAAATCGGGAGA    150
                     |.||||||||.||.||.|||||.|||||.|||.|||||||.||.||.|||
BL00739___yvs    101 TCGGAGCATTGATTCCGGATATATGCCATACAAAAAGCAAGATAGGCAGA    150

BSNT_04975___    151 AAATTTCCTATTTTATCGAAAGTGGTCAGCTCCGTTTTTGGCCATCGCAC    200
                     |...||||.||||||||...|||||||||.||.||.||.||.||..|.||
BL00739___yvs    151 AGGCTTCCGATTTTATCAGCAGTGGTCAGTTCTGTCTTCGGGCACAGGAC    200

BSNT_04975___    201 ATTTACACACAGCTTGCTGTTTATGCTCATCATGTTTTTTAT------CA    244
                     .||||||||||||.||||.|||.|||||||||.|    ..||      ||
BL00739___yvs    201 GTTTACACACAGCCTGCTCTTTTTGCTCATCACG----GCATTCGCGGCA    246

BSNT_04975___    245 CTTCTACATACATTCCAGATAAAAACATATCAGCCGGCCTGATGATCGGA    294
                     |.|.|  |||..||.|||||.|.|.||||...|.|||..|||||..||||
BL00739___yvs    247 CATTT--ATATTTTGCAGATCAGAGCATACTTGTCGGATTGATGGCCGGA    294

BSNT_04975___    295 ATGGCGAGCCACTTGATTCTTGACGCTTGGACGGTGAACGGAATCAAATT    344
                     |||||.|||||..||.|.||.||.||..||||.||.|||||.||||||.|
BL00739___yvs    295 ATGGCAAGCCATCTGCTCCTCGATGCCGGGACTGTAAACGGCATCAAACT    344

BSNT_04975___    345 ATTATTCCCTTCAACGATCCGC-------GTTCGGCTTCCATTATATATG    387
                     .||.||.||       .|||||       |||||.||.||..|.||.||.
BL00739___yvs    345 TTTCTTTCC-------GTCCGCCATTAAGGTTCGTCTGCCCCTTTACATT    387

BSNT_04975___    388 AAGACAGGC----AGTTTTTCTGAGCAGCTCGTGCTAGCCGGCCTGACCC    433
                     ||.||.|||    ||    .|.||.||..||||.||.||.|..||.|||.
BL00739___yvs    388 AAAACCGGCGGGAAG----GCGGAACAAGTCGTTCTTGCTGTGCTCACCG    433

BSNT_04975___    434 TTGCTTCATGTTACTACTTTTATATGC-----TGTTTCATGGGCGCATGT    478
                     |||.|||.||.||    |||||| |||     ||.|       |||.||.
BL00739___yvs    434 TTGTTTCGTGCTA----TTTTAT-TGCGAACTTGAT-------CGCCTGA    471

BSNT_04975___    479 TTTAA    483
                          
BL00739___yvs    471 -----    471


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