Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04923 and BL00745

See Amino acid alignment / Visit BSNT_04923 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:06
# Commandline: needle
#    -asequence dna-align/BSNT_04923___gerAC.1.5803.seq
#    -bsequence dna-align/BL00745___gerAC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04923___gerAC-BL00745___gerAC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04923___gerAC-BL00745___gerAC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04923___gerAC
# 2: BL00745___gerAC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1257
# Identity:     710/1257 (56.5%)
# Similarity:   710/1257 (56.5%)
# Gaps:         276/1257 (22.0%)
# Score: 1657.5
# 
#
#=======================================

BSNT_04923___      1 ATG--AAAATCCGGATTTTATGTATGTTTATATGCA-CCCTATTGCTG--     45
                     |||  ||||...|||        |||||    .||| ||||.|..|||  
BL00745___ger      1 ATGAAAAAAAAGGGA--------ATGTT----AGCAGCCCTTTCTCTGCT     38

BSNT_04923___     46 --TCC--------GGATGCTGGGACAGTGAGAATATCGAGGAATTAAGCT     85
                       |||        ||.|||||||||||...|.|.|||||     .|||||
BL00745___ger     39 TCTCCTTTTAACAGGCTGCTGGGACAGCAGGCAGATCGA-----AAAGCT     83

BSNT_04923___     86 TAGTGATCGGAGTAGGGCTAGAC-------AAGCC--TGACGATGAAAAT    126
                     ||| .||||...|.||.||.|.|       |||.|  .||||||.||||.
BL00745___ger     84 TAG-CATCGCCATCGGCCTTGCCCTCGATAAAGGCGAGGACGATAAAAAC    132

BSNT_04923___    127 TTAGAGCTGACACAGCAAATTCTCGTGCCGAAAAAAATCAG------CG-    169
                     .|..|..||||..|.||..||||.||.||.|||||.|||.|      || 
BL00745___ger    133 GTGAAATTGACGTATCAGTTTCTTGTTCCTAAAAAGATCGGACAAGACGG    182

BSNT_04923___    170 -AGGGCTCTTCATCTGATCCGACACAGCTTTCTATCACAAAG-GGTG---    214
                      ||.||||     ..||||||         |||     |||| ||||   
BL00745___ger    183 CAGCGCTC-----AGGATCCG---------TCT-----AAAGTGGTGTCC    213

BSNT_04923___    215 ----------AAACTGTCCATCAAATGATGAGAACCTCTGCATTAAAGCA    254
                               |.||.||||||||||..||..|..||.|.||.||.||..|
BL00745___ger    214 ACCTCCGGAAACACGGTCCATCAAACCATCCGTTCCACCGCTTTGAAAAA    263

BSNT_04923___    255 TAATCCTACG---TTTTTACAGCATTTGC--GTCTCATTCTGCTTTCCAA    299
                     | .|||  ||   ||.|..||||||.|||  |||     |||.|||.|..
BL00745___ger    264 T-TTCC--CGGTATTCTCGCAGCATCTGCAAGTC-----CTGATTTTCTC    305

BSNT_04923___    300 AAACGTGATTG---CGGATCAAATC---GGAACGGATGCCATT-ATTAAC    342
                     |.|.|.|.|||   |.||| |..||   ||||      .|||| ||.||.
BL00745___ger    306 AGAGGAGCTTGTATCCGAT-ATTTCTCTGGAA------GCATTGATCAAT    348

BSNT_04923___    343 CAGTTTGTCAGAGACAACGGAACAAGGAGGAGTTCCTACGTCTTTATCAC    392
                     ||.|||.|.||.||||||.|.|..||.|||||...|.|.||||.|||.||
BL00745___ger    349 CAATTTATTAGGGACAACAGCATCAGAAGGAGCAGCGAGGTCTATATGAC    398

BSNT_04923___    393 -----CAACGGCCGAACTAAGGATATATTTAACATGAA---TGATG----    430
                          .|.|.|||||   .||.|||        .||||   |||||    
BL00745___ger    399 GCCCGGAGCTGCCGA---CAGCATA--------CTGAAGGTTGATGGTGC    437

BSNT_04923___    431 AAGACGAACCCGCATCCAACGTGAT--ATATGATCT-----GACAGAGAA    473
                     ||| .||.||.||.|||.|||||||  |.|..||||     .||||||..
BL00745___ger    438 AAG-TGACCCTGCGTCCGACGTGATCCACAGCATCTCTGAAAACAGAGCT    486

BSNT_04923___    474 TAATAAGGTGACGATCAGAATGATGGAGCCAGTTACATTGGGGGAGATCT    523
                     |       .||||||||...||.|..||||.||.||||||...||.||.|
BL00745___ger    487 T-------CGACGATCAAGCTGCTCAAGCCCGTCACATTGAACGATATTT    529

BSNT_04923___    524 CAGAACACTTAACCT-CTGAC-GATTCATTCCTCATCCCTCATGTCGGTA    571
                     | ||    ||||..| |.|.| ||||.||  ||.||  .|||||.||  |
BL00745___ger    530 C-GA----TTAAAATGCAGTCTGATTTAT--CTTAT--ATCATGCCG--A    568

BSNT_04923___    572 AG---------GAAAACGGAAAGCT----CGCGATAAACGGAGCCTCTAT    608
                     ||         |||||.|||.||||    |..|| |..|||.|||   .|
BL00745___ger    569 AGGTTGTGATCGAAAAAGGACAGCTTCAGCTTGA-AGGCGGCGCC---GT    614

BSNT_04923___    609 CATCAAAAATAAATTATGGCACGGAGA----------TCTCACCCCGATT    648
                     .||||||||.||...||..||.|.|.|          |||||    |||.
BL00745___ger    615 GATCAAAAACAACAAATACCATGCAAACCTTTCGCCGTCTCA----GATC    660

BSNT_04923___    649 GAGGTTCAAAATATCAACTTATTTTCAGGCAATGTCGAGGGAGGCGTCAT    698
                     ||.|..|      |.||.|||||..|.|||||||||...||.||.||.||
BL00745___ger    661 GAAGCGC------TGAATTTATTAACTGGCAATGTCATCGGCGGAGTGAT    704

BSNT_04923___    699 TGACTTGAAGCGCGATGGCCATCTCTTTTCTTATAAAGTATATTCAAGCA    748
                     .||||..|.||..|||||.|||.|.||.||.|||.||||.|.|||     
BL00745___ger    705 CGACTCAAGGCATGATGGACATTTGTTCTCGTATGAAGTGTTTTC-----    749

BSNT_04923___    749 ATCGGAAGATCAA------GACGGCCTATAAGG----ACGGAAAGTTCAA    788
                         ||.||.|.|      | |||.|.||.|||    |||||||||.|||
BL00745___ger    750 ----GATGACCCACCGCGTG-CGGGCGATGAGGCAGAACGGAAAGTACAA    794

BSNT_04923___    789 ATTCACCGTCACCCGCACTATTGAAGGTCGTCTATCTGAGGACTGGAATC    838
                     ||||..|||.|....||.||||.||||..|.||.||.|||||||||.|||
BL00745___ger    795 ATTCGTCGTAAATGCCAATATTAAAGGAAGGCTGTCAGAGGACTGGTATC    844

BSNT_04923___    839 CTAGTGAAGATTCGTTTAAGGATTCATATATTAAAAGCATTGAAAAGACA    888
                     .|.|.||.|||||.|||||.||...||||||.||||.|||.||.||..|.
BL00745___ger    845 TTGGAGAGGATTCTTTTAATGACCAATATATAAAAAACATAGAGAAATCG    894

BSNT_04923___    889 GTCGAAAAACAAGTACACAAAAC------AGTAAC-GA--CATTTATTAC    929
                     ||..|||||.|..| ||.|||.|      ||.|.| ||  |||.|     
BL00745___ger    895 GTTCAAAAAGACAT-CAAAAAGCGGGTTGAGCAGCTGATCCATGT-----    938

BSNT_04923___    930 AGAGAAACTGCAGAAAGAGATCAAAGCGGATGTGACCGGATT-----GGG    974
                           .||||||.|.||.||||||.||||.||.||| ||||     |  
BL00745___ger    939 ------CCTGCAGCACGATATCAAAACGGACGTCACC-GATTTTTCCG--    979

BSNT_04923___    975 AAACCAAGTCAGAATTCATTATCCTCAAAAGT-GGAAAAAGATCTCAAGA   1023
                       ||.|.|...|.||..|||.|||..|..||| |||||||||    .|||
BL00745___ger    980 --ACAATGCGCGGATCAATTTTCCGAAGGAGTGGGAAAAAGA----CAGA   1023

BSNT_04923___   1024 ---AAATGGGATGATGATTATTTCAGCAATGCGGAAATAGACTACCGGGT   1070
                        ||.|||   ||..|..|.||||||.|.||..|.||.|||||.|...|
BL00745___ger   1024 TTCAATTGG---GACAAACACTTCAGCGAAGCCTATATCGACTATCATAT   1070

BSNT_04923___   1071 CAATG---TGATTGTCAGAGACTTCGGAACGAAAGGCGCAAACAAATAA-   1116
                     .||.|   .|||  |||| |||||.|||||.|||||.|| .||||| || 
BL00745___ger   1071 TAAAGCGACGAT--TCAG-GACTTTGGAACAAAAGGTGC-GACAAA-AAG   1115

BSNT_04923___   1116 -------   1116
                            
BL00745___ger   1116 CAGATAG   1122


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