Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04922 and BL00746
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:06
# Commandline: needle
# -asequence dna-align/BSNT_04922___gerAB.1.5803.seq
# -bsequence dna-align/BL00746___gerAB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04922___gerAB-BL00746___gerAB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04922___gerAB-BL00746___gerAB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04922___gerAB
# 2: BL00746___gerAB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1167
# Identity: 743/1167 (63.7%)
# Similarity: 743/1167 (63.7%)
# Gaps: 135/1167 (11.6%)
# Score: 2035.5
#
#
#=======================================
BSNT_04922___ 1 AT-GAGCCAAAAA--CAGACTCCA-CTGAAACTTAATACCTTTCAAGGTA 46
|| ||.||||||| ||| |.|.| |.|| |||..||.|.|.|||...
BL00746___ger 1 ATGGATCCAAAAAATCAG-CACGATCGGA---TTAGCACGTATGAAGCCG 46
BSNT_04922___ 47 TTTCTATTGTTGCAAATACAATGCTTGGGGCCGGACTTTTAACATTGCCG 96
.|||.||..|..|.|..||||||||.||.||.||.||..|.||..||||.
BL00746___ger 47 CTTCGATCATAACCAGCACAATGCTCGGCGCAGGCCTGCTGACGCTGCCC 96
BSNT_04922___ 97 CGAGCGCTGACCACTAAGGCTAATA-------CGCCTGACGGCTGGATCA 139
.|.|||||||| ||.||.| ||||.|||||.||||||.
BL00746___ger 97 AGGGCGCTGAC-------GCAAAAAACGCTGTCGCCGGACGGATGGATCG 139
BSNT_04922___ 140 CGCTGATATTAGAAGG---TTTCATTTTT---ATTTTCTTCATTTATTTA 183
...|.||.||.||.|| |.||.||||| |||.|||.|||..||..|
BL00746___ger 140 TATTAATCTTTGAGGGGCTTGTCTTTTTTCTCATTATCTACATCAATGCA 189
BSNT_04922___ 184 AACACGCTCATTCAGAAAAAACATCAATACCCT-TCACTCTTTGAATATT 232
||.| ||.|| |||||||| |||...||| ||..|.||||| |
BL00746___ger 190 AAAA---TCGTT---AAAAAACA-CAACGTCCTGTCTTTTTTTGA----T 228
BSNT_04922___ 233 T--------GAAGGAAG-GGCTTGGGAAATGGATCGGCAGCATCATCGGC 273
| |||||..| |||||...| |||||.|..||..||..|
BL00746___ger 229 TACACAAGAGAAGGCTGCGGCTTTATA-----ATCGGGAATATTCTCAAC 273
BSNT_04922___ 274 CTTTTGATC---TGCGGCTAT--TTCCTCGGCGTAGCCAGCTTCG-AGAC 317
||.||.||| | ||| |||.|.|||||.||||||||.| ||.|
BL00746___ger 274 CTGTTAATCGTTT-----TATACTTCATGGGCGTGGCCAGCTTTGAAGCC 318
BSNT_04922___ 318 ACGGGCAATGGCTGAAATGGTGAAGTTTTTCCTGCTGGAGAGAACCCCAA 367
| ||||.|||||||||||||..|||||||||||.||..||...||.||.|
BL00746___ger 319 A-GGGCGATGGCTGAAATGGCAAAGTTTTTCCTTCTTCAGTTCACGCCGA 367
BSNT_04922___ 368 TTCAAGTCATCATTTTAACGTTTATTTGCTGCGGTATTTATTTAATCGTT 417
|....||.|..|||||..|.|||||...|||.|..||||||||..|.||.
BL00746___ger 368 TGAGCGTGACGATTTTCGCTTTTATCGTCTGTGCAATTTATTTGGTTGTC 417
BSNT_04922___ 418 GGGGGCTTAAGTGATGTGTCGCGGCTGTTTCCCTTTTATTTAACGGTAAC 467
|||||..|.||.|||.||||...|.|.||.||.||.|...|..|.||.||
BL00746___ger 418 GGGGGTATCAGCGATATGTCAAAGATATTCCCGTTCTTCCTGTCCGTTAC 467
BSNT_04922___ 468 CATTATTATTTTGCTGATTGTGTTCGGGATCAGTTTTAAAATTTTTGATA 517
||||.|.|||.|.|||||.||.|.|||..|.||..|.||.||.|||.|..
BL00746___ger 468 CATTGTCATTCTTCTGATCGTCTGCGGACTGAGCCTGAATATGTTTCAGC 517
BSNT_04922___ 518 TCAATAATTTGCGTCCTGTTTTAGGCGAAGGCCTTGGACCCATT--GCAA 565
|.||..|||||||.||.|||.|.|||...|| .|||||.||..| |||.
BL00746___ger 518 TGAACCATTTGCGGCCGGTTCTCGGCCTTGG-TTTGGAGCCGGTCAGCAG 566
BSNT_04922___ 566 ACTCCCTT--ACCGTCGTTTCCATCTCTTTTTTAGGAATGGAAGTGATGC 613
| .||| ||.|||||||||||.||.||||||||..||||..|||||.
BL00746___ger 567 A---GCTTTGACGGTCGTTTCCATTTCATTTTTAGGGGTGGAGCTGATGA 613
BSNT_04922___ 614 TGTTTCTTCCTGAACATATG---AAGAAAAAGAAATACACGTTCAGATAT 660
|||||||.|| ||| |||.| ||.|.|||||||..|...||.||..||
BL00746___ger 614 TGTTTCTGCC-GAA-ATACGTCAAAAACAAAGAAAAGCTTTTTAAGGCAT 661
BSNT_04922___ 661 GCGTCTCTAGGATTTTTAATTCCGATTATTTTATATATCCTTACGTATAT 710
||.|..|.||||||...||.|||.|..|.|||||||||||.||.|.|..
BL00746___ger 662 -CGGCGATTGGATTTGGGATACCGCTCTTCTTATATATCCTCACCTTTGC 710
BSNT_04922___ 711 TATCGTTGTCGGAGCTTTGACCGCTCCCGAGGTAAAAACGCTGATTTGGC 760
..||||||||||.||..|||||||..|.|||||.|..|||.|||..||||
BL00746___ger 711 GGTCGTTGTCGGGGCGCTGACCGCGACTGAGGTCATGACGTTGACATGGC 760
BSNT_04922___ 761 CGACTATTTCTCTCTTTCAGTCCTTTGAGCTTAAAGGCATATTTATTGAA 810
||||.||.||..|.||||||||.||||||.|.|.|||.||.||.||.|||
BL00746___ger 761 CGACGATCTCGTTGTTTCAGTCTTTTGAGATAAGAGGGATTTTCATCGAA 810
BSNT_04922___ 811 CGGTTTGAATCGTTTTTACTGGTGGTCTGGATCATCCAGTTTTTCACCAC 860
.||||.|||||||||||.||.||..|.||||..||||||||||||||.||
BL00746___ger 811 AGGTTCGAATCGTTTTTGCTCGTCATTTGGACGATCCAGTTTTTCACAAC 860
BSNT_04922___ 861 ATTTGTC--ATTTACGGATACTTTGCCGCTAACGGGCTAAAGAAGAC--A 906
.|||||| .|.|||| ||||||||||||...||.|| .|||.|| |
BL00746___ger 861 GTTTGTCGTCTATACG--TACTTTGCCGCTTCAGGACT--TGAAAACGTA 906
BSNT_04922___ 907 TTTGGATTATCGACT---AAAACAAGCATGGTGATTATCGGTATAGCG-- 951
||.|| ||.|.|| ||||.||.|.|..|..|.|||| |||
BL00746___ger 907 TTCGG---ATGGCCTGTGAAAAAAAACGTCCTCTTCATCG-----GCGTT 948
BSNT_04922___ 952 GTCTTTTATTTTTC-TCTCTGG--CCGGATGACGCCAATCAAGTCATGAT 998
|||.|.|||.|..| ||.||.| |||...||||||||.||.||||
BL00746___ger 949 GTCATCTATCTAGCATCCCTTGTCCCGCGGGACGCCAACCAGGTCA---- 994
BSNT_04922___ 999 G----TATAGCGATTATCTTGGCTATATTTTTGTC-TCCCTGT-TTCTG- 1041
| |..|||||.||.|||||.|||||.|||.|| | ||| |||||
BL00746___ger 995 GCGCCTTCAGCGACTACCTTGGATATATCTTTATCGT---TGTCTTCTGT 1041
BSNT_04922___ 1042 ---CTTCCGTTCATTCTCTTTTTCATTGTAGCTC-------TCAAGAGGA 1081
||||||.|.||..||||||| |||| ||||.||||
BL00746___ger 1042 GCACTTCCGCTTATGATCTTTTT-------GCTCGTGTCCATCAAAAGGA 1084
BSNT_04922___ 1082 GGATTACAGCAAAATGA 1098
||.||||..|...||||
BL00746___ger 1085 GGTTTACTTCTTCATGA 1101
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