Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04915 and BL00749

See Amino acid alignment / Visit BSNT_04915 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:06
# Commandline: needle
#    -asequence dna-align/BSNT_04915___cssS.1.5803.seq
#    -bsequence dna-align/BL00749___cssS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04915___cssS-BL00749___cssS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04915___cssS-BL00749___cssS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04915___cssS
# 2: BL00749___cssS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1423
# Identity:    1009/1423 (70.9%)
# Similarity:  1009/1423 (70.9%)
# Gaps:         143/1423 (10.0%)
# Score: 3395.5
# 
#
#=======================================

BSNT_04915___      1 ATGAAAAACAAGCCGCTCGCGTTTCAGATATGGGTTGTCATATCCGGCAT     50
                     |||||.||||.|.|||||||.|||||.||.|||..||||||.|.||||||
BL00749___css      1 ATGAAGAACAGGTCGCTCGCCTTTCAAATTTGGAGTGTCATTTGCGGCAT     50

BSNT_04915___     51 CCTGTTAGCGATATCGATTTTACTG-CTTGTGT-TATTTTCAAACACGCT     98
                     |||||||.||.|.||||||||.||| |  ||.| ||||.||.|..||.||
BL00749___css     51 CCTGTTAACGGTCTCGATTTTGCTGAC--GTTTCTATTCTCGACGACACT     98

BSNT_04915___     99 GCGAG-ATTTTTTCACTAATGAAACGTATACGACGATTGAAAATGAGCAG    147
                     || || |.|||||||||.||||||..|||||.|..|||||||||||||||
BL00749___css     99 GC-AGAACTTTTTCACTGATGAAATTTATACAAACATTGAAAATGAGCAG    147

BSNT_04915___    148 CATGTTCTGACAGAGTACCGCCTGCCAGG----TTCGATT-----GAAAG    188
                     |||||||||||.||.|||         ||    |.|||||     |||||
BL00749___css    148 CATGTTCTGACGGAATAC---------GGATTTTCCGATTCACCGGAAAG    188

BSNT_04915___    189 GCGCTATTACAGCGAGGAAGCGACGGCGC-CG----ACAACTGTCCGCTC    233
                     ..||   |.|.||  ||||||..||||.| ||    ||||   .||||..
BL00749___css    189 AGGC---TTCGGC--GGAAGCAGCGGCTCGCGAAGCACAA---ACCGCCA    230

BSNT_04915___    234 CGTACAGCACGTGCTCCTTCCTGA-AAATGAAGAGGCTTCT-TCAGACAA    281
                     |||.||||||||.||.||.||||| |||.|||   .|.||| ||||    
BL00749___css    231 CGTTCAGCACGTCCTGCTGCCTGAGAAAGGAA---CCGTCTATCAG----    273

BSNT_04915___    282 GGATTTAAGC------ATTCTGTCATCTTCATTTATCCACAAGGTGTACA    325
                            |||      |||||..|...||||||||||.|.||||||.|.|
BL00749___css    274 -------AGCCCGCAGATTCTCCCCGATTCATTTATCGAGAAGGTGCAGA    316

BSNT_04915___    326 AGCT-GGCTGATCA-GCAGGA------AGCTAAAAAGAAACGTTACAGCG    367
                     |||| ||  ||..| ||||||      |.|.||||.|.|   ||    ||
BL00749___css    317 AGCTCGG--GAAAAGGCAGGACGAGTCATCGAAAAGGTA---TT----CG    357

BSNT_04915___    368 CCG-ACGTCAATGGAGAGAAAGTGTTTTTTGTCATTAAAAAGGGACTTTC    416
                     ..| |.|||||.||||||.|.||.||.|||||..|.|||||         
BL00749___css    358 GAGAATGTCAACGGAGAGCACGTTTTCTTTGTGCTCAAAAA---------    398

BSNT_04915___    417 CGTCAAT---------GGACAATCAG-CG---ATGATGCTCTCTTACGCG    453
                         |||         ||||   ||| ||   .||.||.|.||.||.|||
BL00749___css    399 ----AATCCAGACCCAGGAC---CAGACGTTTCTGTTGTTATCCTATGCG    441

BSNT_04915___    454 CTTGATTCTTATCGGGACGATTTGGCCTATACCTTATTCAAACAGCTTCT    503
                     ||||||||.||..|||||||||||.|..||||..|.||.||.|||||.||
BL00749___css    442 CTTGATTCATACAGGGACGATTTGTCTCATACGCTGTTTAAGCAGCTGCT    491

BSNT_04915___    504 GTTTATTATAGCT-GTCGTCATTTTATTAAGCTGGATTCCGGCTATTTGG    552
                     ||||||| |.|.| |||||||||||..|.|||||||||||..||||||||
BL00749___css    492 GTTTATT-TTGATCGTCGTCATTTTGCTGAGCTGGATTCCTTCTATTTGG    540

BSNT_04915___    553 CTTGCAAAGTATTTATCAAGGCCTCTTGTATCATTTGAAAAACACGTCAA    602
                     ||.||.||.|||||||||||.||.||.||..|..|||||||.||||||||
BL00749___css    541 CTGGCGAAATATTTATCAAGACCGCTCGTCACGCTTGAAAAGCACGTCAA    590

BSNT_04915___    603 ACGGATTTCTGAACAGGATTGGGATGACCCAGTAAAAGTGGACCGGAAAG    652
                     ||..||.|||.||||||||||||||||.||.||.|..||.|||.||.|||
BL00749___css    591 ACAAATCTCTAAACAGGATTGGGATGATCCCGTGATTGTCGACAGGGAAG    640

BSNT_04915___    653 ATGAAATCGGAAAATTGGGCCATACCATCGAAGAGATGCGCCAAAAGCTT    702
                     |.||||||||.||..||||.||.|||||.|||||.|||||.||||||||.
BL00749___css    641 ACGAAATCGGCAAGCTGGGGCACACCATTGAAGACATGCGGCAAAAGCTC    690

BSNT_04915___    703 GTGCAAAAGGATGAAACAGAAAGAACTCTATTGCAAAATATCTCTCATGA    752
                     .|.||.||.|||||.||||||.|.||.||..|||||||.|||||.||.||
BL00749___css    691 ATCCAGAAAGATGAGACAGAACGCACGCTCCTGCAAAACATCTCCCACGA    740

BSNT_04915___    753 TTTAAAAACGCCGGTCATGGTCATCAGAGGCTATACACAATCAATTAAAG    802
                     ..|.|||||||||||||||||||||.|.||.|||||.||.||.||.||||
BL00749___css    741 CCTGAAAACGCCGGTCATGGTCATCCGCGGGTATACCCAGTCGATCAAAG    790

BSNT_04915___    803 ACGGGATTTTTCCTAAAGGAGACCTTGAAAACACTGTAGATGTTATTGAA    852
                     ||||.||.|..|||||||||||..|.||||||||..|.||.||.||||||
BL00749___css    791 ACGGCATCTACCCTAAAGGAGATTTGGAAAACACGATTGAAGTCATTGAA    840

BSNT_04915___    853 TGCGAAGCTCTTAAGCTGGAGAAAAAAATAAAGGAT-TTATTATATTTAA    901
                     .||||||||...||.||.||.||.|||||.|||||| ||.|| |||.|.|
BL00749___css    841 GGCGAAGCTGAAAAACTTGAAAAGAAAATCAAGGATCTTCTT-TATCTGA    889

BSNT_04915___    902 CGAAGCTGGATTATTTAGC-GAAGCAA-AAAGTGCAGCACG--ACATGTT    947
                     |.|||||.|||||||| || ||..||| |||| .|||.|||  || |.||
BL00749___css    890 CAAAGCTTGATTATTT-GCTGAGACAAGAAAG-ACAGTACGGAAC-TTTT    936

BSNT_04915___    948 CAGTATTGTAGAAGTGACAGAAGAAGTCATCGAACGATTGAAGTGGGCGC    997
                     .| |||...|||.||.|...|||||||..|.|||||.||||..|||.|..
BL00749___css    937 GA-TATACAAGAGGTCATTAAAGAAGTTGTTGAACGCTTGAGATGGTCCA    985

BSNT_04915___    998 GGAAAGAACT-ATCGTGGGAAATTGATGTAGAAGAGGATATTTTGATGCC   1046
                     ..||||||.| |.| |||.|.||||||.|.||||||||.|...||.||.|
BL00749___css    986 AAAAAGAATTGAAC-TGGAAGATTGATCTTGAAGAGGAAACAATGTTGAC   1034

BSNT_04915___   1047 GGGCGATCCGGAGCAATGGAACAAACTCCTCGAAAACATTCTGGAAAATC   1096
                     ||||||||..||.|||||||.|||.||..|.||||||.||||.|||||.|
BL00749___css   1035 GGGCGATCAAGAACAATGGAGCAAGCTGTTGGAAAACGTTCTTGAAAACC   1084

BSNT_04915___   1097 AAATCCGCTATGCTGAGACAAAAATAGAAATCAGCATGAAACAAGATGAT   1146
                     |.|||||||||||.||||||...||.||.||||||.|    ||.|..|| 
BL00749___css   1085 AGATCCGCTATGCGGAGACATTCATTGACATCAGCGT----CAGGTCGA-   1129

BSNT_04915___   1147 CGAA-----ATATCG-TGATCACCATTAAAAATGACGGTCCGCATATTGA   1190
                     ||||     ||| || ||||||||||||||||||||||.|||||.|||||
BL00749___css   1130 CGAAAGAACATA-CGTTGATCACCATTAAAAATGACGGACCGCACATTGA   1178

BSNT_04915___   1191 AGATGAGATGCTCTCCAGCCTCTATGAGCCTTTTAATAAAGGGAAGAAAG   1240
                     |||.||||||||.||||||||.||||||||||||||||||||||||||||
BL00749___css   1179 AGAAGAGATGCTTTCCAGCCTGTATGAGCCTTTTAATAAAGGGAAGAAAG   1228

BSNT_04915___   1241 GCGAATTCGGCATTGGTCTAAGCATCGTAAAACGAATTTTAACTCTTCAT   1290
                     ||||||||||||||||.||.||||||||.||||||||.|||||.||.|| 
BL00749___css   1229 GCGAATTCGGCATTGGACTCAGCATCGTTAAACGAATCTTAACGCTCCA-   1277

BSNT_04915___   1291 AAGGCAT-CT---ATCTCAATTGAAAATGACAAAACGGGTGTAACATACC   1336
                        .||| ||   ||..|.|||...|||||..||||.|||||....|||.
BL00749___css   1278 ---CCATGCTGACATGACCATTCGGAATGATCAAACCGGTGTGTGCTACT   1324

BSNT_04915___   1337 GCATAGCAGTGCC---AAAATAG   1356
                     ..|||.|.||.||   |||.|||
BL00749___css   1325 CAATATCCGTTCCGAGAAATTAG   1347


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.