Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01575 and BL00762

See Amino acid alignment / Visit BSNT_01575 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_01575.1.5803.seq
#    -bsequence dna-align/BL00762.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01575-BL00762.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01575-BL00762.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01575
# 2: BL00762
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 974
# Identity:     471/974 (48.4%)
# Similarity:   471/974 (48.4%)
# Gaps:         385/974 (39.5%)
# Score: 902.0
# 
#
#=======================================

BSNT_01575         1 ATGAAAAA------------AGAATTT--------GAGC-----------     19
                     |||    |            ||||.||        ||||           
BL00762            1 ATG----ACCGTTGTGCCGGAGAAATTGTACTGTAGAGCTTGTAAGAGAA     46

BSNT_01575        20 AAACAA--CACTAGAGGAAAATGTTTACTGTTCCAAATG----TAAAAAT     63
                     ||||||  ||..|||          ||  |||..|||||    |.|.|||
BL00762           47 AAACAAACCATCAGA----------TA--GTTAAAAATGAGCATGACAAT     84

BSNT_01575        64 AATACTAAA-CATTTAATAA-TAA---AGAGTCATAGAAGAGGTTCATTT    108
                     .| |||||| .|||.||||| |||   |||.|     |.||        |
BL00762           85 GA-ACTAAAGTATTCAATAAGTAATTTAGATT-----ATGA--------T    120

BSNT_01575       109 CAAGAAATTGAACCAGAATTTCAGTGGCAGG-------AATCATTTCATA    151
                     .||||||||||.....||||| |.||  |||       ||| |.|||  |
BL00762          121 GAAGAAATTGATTTTCAATTT-AATG--AGGATTATGCAAT-AGTTC--A    164

BSNT_01575       152 TTGTAGAGTGTGCAGGTTGTCAAAATATTTCTTTTGTTAATCAATAT--G    199
                     .|||||       |||||||.|...||||.|||||.|.||  |||||  |
BL00762          165 ATGTAG-------AGGTTGTGACGCTATTGCTTTTCTAAA--AATATACG    205

BSNT_01575       200 GGGATGAGGATACTTG------------GG-----AATAT----GTGAGA    228
                     |.|||||.||||  ||            ||     |.|||    .|||.|
BL00762          206 GCGATGAAGATA--TGTTTCATATAGTCGGTTCAAATTATCATACTGATA    253

BSNT_01575       229 GGAGAA-AGGGAGTGG----CACGATGTCTTTAAAGTTTATCCAG-----    268
                      ||||| |....||.|    |||  ||||||         |||||     
BL00762          254 -GAGAATACTTTGTCGAATACAC--TGTCTT---------TCCAGAAGAG    291

BSNT_01575       269 --AAAAACGATTTGAGGATAC---AGAAGAGTATAGGATAGAACAAGCAT    313
                       |||||.|    ||||||.|   ||||.|||      ||..|||   ||
BL00762          292 CCAAAAAAG----GAGGATCCGGTAGAACAGT------TATTACA---AT    328

BSNT_01575       314 TC-AAGAACCGATATTGGCTAAAAGTAAAAGCGTTTAGTTATGTACCGTC    362
                     || |||||            |||..|.||..||.|.|.|||..||     
BL00762          329 TCAAAGAA------------AAATATGAATTCGATCACTTACCTA-----    361

BSNT_01575       363 AGCTCTTTATAATTTGTATAAGCAAAT-----TATTCAAGCTTAT----A    403
                        .|||.||||.|.|.||.|| ||||     .|||.|.||||||    |
BL00762          362 ---ACTTAATAAATGGAATTAG-AAATGAAACAATTAATGCTTATCGCCA    407

BSNT_01575       404 ATGAAAATCTTAATATATTGTGTGCTTCAGGTTTAA----GGATTTTATT    449
                     |.|    |.|.|||.||||.||           .||    |||    |||
BL00762          408 ACG----TATGAATTTATTATG-----------CAATACGGGA----ATT    438

BSNT_01575       450 AGAAGGTATATGCAACGATCTAGGTATAAAAAAAGGGTATGTTTATGATA    499
                     ||||.|..|||               |.||..||   ||||  ||||.||
BL00762          439 AGAATGCTTAT---------------TGAATCAA---TATG--TATGGTA    468

BSNT_01575       500 A--GGATAAACAAATTATTAAAAAAAATGGAGAGACCAATCCCAAAAAAA    547
                     |  |||          |||.|.|||       |||||.|           
BL00762          469 AATGGA----------ATTGATAAA-------AGACCGA-----------    490

BSNT_01575       548 GAGAGAGTTTAGAGGGGA-----AGTTTT--TTGGTCTTTATGAC-----    585
                        ||| ||.|||.||||     |||.||  .|||||.|.|..||     
BL00762          491 ---AGA-TTAAGAAGGGAGAACCAGTGTTAGATGGTCATAAAAACCCGGT    536

BSNT_01575       586 AATGG-----TTATATATTGTTT---------AATCAAGCGCTTATTTTA    621
                     |||||     |||.|| |||.||         |||.||   ||||   .|
BL00762          537 AATGGTCAATTTAAAT-TTGGTTCAAAAGATAAATGAA---CTTA---AA    579

BSNT_01575       622 CAAAA-AATA------AGGGGCATCGGAAATGAAGCGAT--TCATG----    658
                     .|||| ||||      |.|.|.|.|   ||.|||| |||  ||.||    
BL00762          580 GAAAAGAATATAATTGATGAGGAAC---AACGAAG-GATACTCTTGGAAA    625

BSNT_01575       659 ---AAGTTGTTG--AACCTG-------ATAAATTAGTTTC-----AAA--    689
                        |||.|||.|  ||.|.|       ||.||.|| ||||     |||  
BL00762          626 TTAAAGATGTAGGAAATCAGACAGTACATGAAATA-TTTCGACCGAAACG    674

BSNT_01575       690 -AAAAATAATCATTATTG-------TAGAGAGCATT----------CTAG    721
                      |.|.||     ||||||       |||| |.||||          |||.
BL00762          675 GAGAGAT-----TTATTGTTATATCTAGA-AACATTAGATTTAATACTAT    718

BSNT_01575       722 AAAACACTTATGAATTAGAGCATCATGAGTTATTGAAGTTGAAAGAAGAT    771
                     ..||.|.||||||||||   |.|||     ||||.||.|   ||.||   
BL00762          719 TTAATATTTATGAATTA---CCTCA-----TATTAAAAT---AACAA---    754

BSNT_01575       772 GAAGATTTA-AAAG-----GTTAA    789
                         |||.| .|||     ||||.
BL00762          755 ----ATTCACCAAGCCCTAGTTAG    774


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.