Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03486 and BL00780

See Amino acid alignment / Visit BSNT_03486 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:28
# Commandline: needle
#    -asequence dna-align/BSNT_03486___spoVAB.1.5803.seq
#    -bsequence dna-align/BL00780___spoVAB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03486___spoVAB-BL00780___spoVAB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03486___spoVAB-BL00780___spoVAB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03486___spoVAB
# 2: BL00780___spoVAB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 441
# Identity:     304/441 (68.9%)
# Similarity:   304/441 (68.9%)
# Gaps:          30/441 ( 6.8%)
# Score: 972.5
# 
#
#=======================================

BSNT_03486___      1 ATGATCGTTAGTGTATTGTTCATTATTTTTGTCGGGCTCGGCGGAGGCAT     50
                     ||||||.||||.||..|.||.||.||.|||.||||.||||..|||||..|
BL00780___spo      1 ATGATCATTAGCGTGATATTTATCATCTTTCTCGGACTCGCAGGAGGGGT     50

BSNT_03486___     51 AACGGTGGGGGCGGGTTTCGTTGCTTTTTTAACCGTAATGGGAATCATTC    100
                     ..|.||.||..|.||.||.||.||||||.|.|||||..|.||.||.||.|
BL00780___spo     51 TGCTGTTGGATCCGGCTTTGTCGCTTTTCTTACCGTGCTTGGCATTATCC    100

BSNT_03486___    101 CGCGGCTGATGCAGCTCACCAAAACAATGAGATTTGTTCAGGCTTATGAA    150
                     ||.||||||..|||||.||.|||||||...|||||.|.|||||.||||||
BL00780___spo    101 CGAGGCTGACTCAGCTGACGAAAACAAAAGGATTTATCCAGGCGTATGAA    150

BSNT_03486___    151 GCGGCTGTCATTCTTGGCGCGGTTTGCGGGGGATGGGAGACGCTTCATAT    200
                     ..||||||||||.|.||||||||||.|||.||||||||..||||..|.||
BL00780___spo    151 TGGGCTGTCATTTTAGGCGCGGTTTTCGGAGGATGGGAATCGCTGAACAT    200

BSNT_03486___    201 GAATCATC-----TTTATCTAACAAAATGGATAGC-TGTGCCGGTCGGGC    244
                     |     ||     |||.|.||.|.||||||.| || |||.|||.||||.|
BL00780___spo    201 G-----TCCCGCTTTTTTTTATCCAAATGGCT-GCTTGTTCCGATCGGCC    244

BSNT_03486___    245 TTCTGGCAGGTTTGTTCGTCGGGATGCTAGCGGCTGCTCTTACAGAAGTT    294
                     ||.|.||.||..|.|||.|.||.|||||.||.||.||.||.||||||||.
BL00780___spo    245 TTTTTGCGGGCGTTTTCATTGGAATGCTTGCAGCGGCGCTAACAGAAGTC    294

BSNT_03486___    295 TTAAATGTCCTGCCGATTTTGGCGAAACGAATCGGGCTCAGAAGTAAAAT    344
                     ||.||.||.||||||||..||||||||||.|||||     ||.|..|.|.
BL00780___spo    295 TTGAACGTGCTGCCGATACTGGCGAAACGCATCGG-----GATGGGAGAC    339

BSNT_03486___    345 C--ATT---ATTTTATTAATGGCCATCGTGATTGGGAA-AATCGCGGGAT    388
                     |  |||   ||..|.|||||||||||.||..|.||.|| |.||.| ||||
BL00780___spo    340 CGGATTTTGATACTTTTAATGGCCATTGTTTTCGGCAAGATTCTC-GGAT    388

BSNT_03486___    389 CTTTATTTCACTGGCTGTACTTTATTGACCAT---TCATAA    426
                     |..|.||.||.|||||   |.||.|||..|||   ||||||
BL00780___spo    389 CGATGTTCCAATGGCT---CATTTTTGTTCATTTGTCATAA    426


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