Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03480 and BL00785

See Amino acid alignment / Visit BSNT_03480 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:28
# Commandline: needle
#    -asequence dna-align/BSNT_03480___spoVAF.1.5803.seq
#    -bsequence dna-align/BL00785___spoVAF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03480___spoVAF-BL00785___spoVAF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03480___spoVAF-BL00785___spoVAF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03480___spoVAF
# 2: BL00785___spoVAF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1524
# Identity:    1047/1524 (68.7%)
# Similarity:  1047/1524 (68.7%)
# Gaps:          93/1524 ( 6.1%)
# Score: 3420.5
# 
#
#=======================================

BSNT_03480___      1 ATGCCGGACCACAAGGAAGAGAAAATTCGGGTTTATCGGA-------ATC     43
                     |||...|..||.|||.|||||||.|  ||     |.||.|       |||
BL00785___spo      1 ATGAGTGCTCAAAAGCAAGAGAAGA--CG-----AACGTATTCCTTGATC     43

BSNT_03480___     44 CAGCTAAAAATGAAGAGTATTTCAAAAACCGTGTTGGGATGGG-GACGAG     92
                     |..||||.|||||||.|||||||||.||.||.||.||.||||| || .||
BL00785___spo     44 CTTCTAAGAATGAAGCGTATTTCAAGAAGCGGGTCGGCATGGGAGA-AAG     92

BSNT_03480___     93 CTATGATGTAGGTGTTCGCAAGCTCACGATTTT---AGATAAAGAGATCC    139
                     ||.|||..|.||.||.||.|||.||...|||.|   |.||.|||   |.|
BL00785___spo     93 CTTTGACCTTGGCGTACGGAAGGTCTTTATTCTCGGACATGAAG---TTC    139

BSNT_03480___    140 AGCTTTACTATCTAAATGGATTATGCGATACAGTTTATATTATTCATTTA    189
                     |||||||.|||.|.||.|||||.|||||.|||...||.||.|||||..|.
BL00785___spo    140 AGCTTTATTATGTCAACGGATTGTGCGACACACAATACATCATTCACCTG    189

BSNT_03480___    190 ATGAGAGAGCTTGTTGCCATTAACAATCGGA---------AAGAAGACCC    230
                     .|.|||||.| ||.|||        |||.||         ||.||||..|
BL00785___spo    190 TTAAGAGAAC-TGGTGC--------ATCTGAATGATAAAGAAAAAGAATC    230

BSNT_03480___    231 TGATGAGCTGGTCGACATCGTCGAAAACAGGCTGCTTAACGCCCAGGTCG    280
                     .|..|||.|.|..||||||||||||||||||||..|.|||...|||||..
BL00785___spo    231 GGGCGAGGTCGAAGACATCGTCGAAAACAGGCTTTTGAACCAGCAGGTTT    280

BSNT_03480___    281 AAAAAGTAAAAAC-CTTGGATGAAACCACCGACCAAGTGCTGTCCGGGCT    329
                     .|||||...|||| ||| ||||||.|...||||||||||.||||.||.||
BL00785___spo    281 CAAAAGCGGAAACGCTT-GATGAAGCTGTCGACCAAGTGTTGTCAGGACT    329

BSNT_03480___    330 CGTCGCTGTCATTGTTGAAGGTGCAGGTTTCGCATTTATAATTGACGTCA    379
                     .||.||..||||.||.||||.|||.||.||.||.|||||.||.||.||||
BL00785___spo    330 GGTTGCCATCATCGTCGAAGATGCGGGCTTTGCTTTTATCATCGATGTCA    379

BSNT_03480___    380 GAAGCTATCCGGGCAGAAACCCGGAAGAACCTGATACGGAAAAGGTAGTC    429
                     |||||||.||||||||||..|||||||||||||||||.|||||.||.||.
BL00785___spo    380 GAAGCTACCCGGGCAGAACGCCGGAAGAACCTGATACAGAAAAAGTCGTA    429

BSNT_03480___    430 AGAGGAGCCAGAGACGGATTTGTTGAAAATATCGTCGTCAATACGGCCCT    479
                     .|.||.||.||.||||||.|.||.||.||.|||.|||||||.||.|||||
BL00785___spo    430 CGCGGTGCAAGGGACGGACTCGTCGAGAACATCATCGTCAACACAGCCCT    479

BSNT_03480___    480 TCTCAGAAGGCGGATCAGAGACGAGCGCCTTCGAGTCAAGATGACTAAAG    529
                     ..|.|||.|.|||||||||||.||||||.|.||...|||.|||..|.|..
BL00785___spo    480 GATTAGACGCCGGATCAGAGATGAGCGCTTGCGCTACAAAATGCTTCATA    529

BSNT_03480___    530 TTGGTGAGCGGTCAAAGACGGATTTAAGCATTTGTTATATAGAAGATATA    579
                     |.|||||.||.||.||.||.||..|..||.|.||.|||.|.|||||..|.
BL00785___spo    530 TCGGTGAACGCTCTAAAACAGACATCTGCCTCTGCTATTTGGAAGACGTT    579

BSNT_03480___    580 GCTGATCCGGATCTGGTTGAGATCGTAGAAAAAGAAGTTGCATCCATTGA    629
                     ||.|||||.|||||.|||||..|..||.||||||||.|||.|      ||
BL00785___spo    580 GCAGATCCCGATCTTGTTGAAGTATTAAAAAAAGAAATTGAA------GA    623

BSNT_03480___    630 TG------TCGATGGATTAACAATGGCAGACAAAACTGTCGAGGAATTCA    673
                     ||      ||||.||..|..|.|||.|.||.|||.|.||.|||||||||.
BL00785___spo    624 TGTGAAGATCGACGGGCTGCCGATGTCGGATAAATCGGTAGAGGAATTCC    673

BSNT_03480___    674 TTGTTAATCAAAGCTATAATCCTTTTCCGCTCGTGCGCTATACAGAAAGA    723
                     |.||....|||.||||.|||||.||||||||.||..|.|.|||.|||||.
BL00785___spo    674 TGGTCGGCCAAGGCTACAATCCGTTTCCGCTTGTCAGGTTTACGGAAAGG    723

BSNT_03480___    724 CCGGATGTGGCCGCAAATCATGTTCTAGAAGGCCATGTTATCATTATAGT    773
                     .|.||.||.|||||||..|||.||.||||.||.|||||.|||.|.||.||
BL00785___spo    724 GCAGACGTAGCCGCAAGCCATATTTTAGAGGGGCATGTCATCGTGATCGT    773

BSNT_03480___    774 GGACACATCGCCGAGTGTGATCATTACCCCGACGACTTTATTTCACCATG    823
                     .||.||.|||||.||.||.|||||.||.|||||.|||||.||||||||||
BL00785___spo    774 CGATACGTCGCCAAGCGTCATCATCACACCGACCACTTTGTTTCACCATG    823

BSNT_03480___    824 TGCAGCATGCTGAAGAATATAGGCAGGCGCCTTCAGTCGGGACCTTTTTA    873
                     |.|||||||||||.|||||.||.|||.||||..|.||.|||||.||||||
BL00785___spo    824 TTCAGCATGCTGAGGAATACAGACAGACGCCGGCTGTTGGGACGTTTTTA    873

BSNT_03480___    874 AGATGGGTAAGATTTTTCGGTATTCTTGCTTCTACTTTATTTCTTCCGAT    923
                     ||.|||||..|.||||||||||||.|.||.||.||.||.||.||.|||.|
BL00785___spo    874 AGGTGGGTGCGGTTTTTCGGTATTTTGGCCTCCACCTTTTTGCTGCCGCT    923

BSNT_03480___    924 CTGGTTTCTCTTTGTGCTTCAGCCTGACCTGCTCT---CGGACAATATGA    970
                     .|||.|.||.|||||..||||.|| |.|  |||||   |.||.|||.|..
BL00785___spo    924 TTGGCTGCTGTTTGTCATTCATCC-GTC--GCTCTTGCCTGATAATTTAT    970

BSNT_03480___    971 AATTTATCGGTTTAAATAAAGATACGCATATCCCGATCATCCTGCAGATA   1020
                     ..||||||||.||.||||||||.||.|||||.|||||.|||.|||||||.
BL00785___spo    971 CGTTTATCGGGTTGAATAAAGACACCCATATTCCGATTATCATGCAGATT   1020

BSNT_03480___   1021 TTTTTAGCTGACTTAGGAATCGAGTTTCTCAGAATGGCTGCCATTCACAC   1070
                     ||..|.||.||..|.||..||||.|||.|.||||||||.||||||||.||
BL00785___spo   1021 TTCCTGGCGGATCTCGGCGTCGAATTTTTAAGAATGGCCGCCATTCATAC   1070

BSNT_03480___   1071 CCCGACGGCTTTATCAACAGCAATGGGTTTAATTGCCGCTGTTCTGATCG   1120
                     .||||||||..|.||.||.||||||||..|.||.||||||||..||||||
BL00785___spo   1071 GCCGACGGCGCTTTCGACTGCAATGGGCCTGATCGCCGCTGTATTGATCG   1120

BSNT_03480___   1121 GGGAGATTGCGATTGAGGTCGGCCTTTTTTCTCCTGAGGTGATTCTGTAC   1170
                     |.||.||.|||||..|.||||||.|.||||||||.||.||.|||.|.|||
BL00785___spo   1121 GCGATATCGCGATCAATGTCGGCTTGTTTTCTCCCGAAGTCATTTTATAC   1170

BSNT_03480___   1171 GTCTCACTTGCGGCGATTGGAACCTTTACGACGCCCAGTTATGAATTAAG   1220
                     ||.||.||..||||.||.|||.|||..|||||.||.||.||.||..|.||
BL00785___spo   1171 GTTTCCCTCTCGGCAATCGGAGCCTACACGACACCAAGCTACGAGCTGAG   1220

BSNT_03480___   1221 CTTGGCAAACAAAATG----AGCCGTCTTGTCCTCATGATACTCGTTGC-   1265
                     |.||||.||.||||||    |||.|| ||.|.|   |||||.|.||.|| 
BL00785___spo   1221 CCTGGCGAATAAAATGGTGAAGCTGT-TTATGC---TGATATTGGTGGCG   1266

BSNT_03480___   1266 CTTATTTCATATAAA----AGGG-CTCGTCATCGGATTTACAGTGCTAAT   1310
                     |||      |.||||    |||| .|.|||||||||||.||..|..|||.
BL00785___spo   1267 CTT------TTTAAAGTGGAGGGATTTGTCATCGGATTAACGATCTTAAC   1310

BSNT_03480___   1311 TATTGCCATGGCAAGCATCAAATCCCTTCAGACACCGTACTTATGGCCGC   1360
                     |||.|..|||.|....||||..||..|.|..||.||.|||||||||||.|
BL00785___spo   1311 TATAGTGATGACTTCGATCAGGTCATTGCGAACGCCTTACTTATGGCCTC   1360

BSNT_03480___   1361 TGATTCCCTTTAACGGAAAGGCGCTGTGGCAGGTTCTTGTCCGCACAGCG   1410
                     |..|.||.||.||.|||||.|||.|.|||||.|||||.||.|||||..|.
BL00785___spo   1361 TCCTCCCGTTCAATGGAAAAGCGTTTTGGCATGTTCTCGTGCGCACGTCC   1410

BSNT_03480___   1411 AAACCTGGCGCAAAAGTAAGACCCAGTATCGTTCACCCCAAAAATCGCTT   1460
                     ...||.||.|.||||||.||.||.||.||||||||.||.|.|||.||||.
BL00785___spo   1411 GTTCCAGGGGGAAAAGTCAGGCCGAGCATCGTTCATCCGAGAAACCGCTC   1460

BSNT_03480___   1461 AAGGCAGCC--TACCAATTCATAA   1482
                     .||.|||||  .|           
BL00785___spo   1461 CAGACAGCCGTGA-----------   1473


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