Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01421 and BL00816
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:56
# Commandline: needle
# -asequence dna-align/BSNT_01421___yfhI.1.5803.seq
# -bsequence dna-align/BL00816___yfhI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01421___yfhI-BL00816___yfhI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01421___yfhI-BL00816___yfhI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01421___yfhI
# 2: BL00816___yfhI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1261
# Identity: 789/1261 (62.6%)
# Similarity: 789/1261 (62.6%)
# Gaps: 209/1261 (16.6%)
# Score: 2519.5
#
#
#=======================================
BSNT_01421___ 1 TTGAGTATCAAAAACCCATCT----------GTAAAATTTATTAT----A 36
||.|||||..|| || ||.|||.|.||.|| |
BL00816___yfh 1 ------ATGAAAAAAACA-CTGCACGCTCCAGTCAAACTGATCATCGCAA 43
BSNT_01421___ 37 TTTGTTCTTATGATTTGCACATTTTCAATCGGCTATACAGAATACGCGGT 86
||| ||||||||||.||||||||.|||||||.||||||.||||..||
BL00816___yfh 44 TTT----TTATGATTTGTACATTTTCCATCGGCTTTACAGAGTACGTCGT 89
BSNT_01421___ 87 GATGGGTATTTTGACGTCGATTGCCAATGA-CTTTCATATACAGGTTTCA 135
.||||||||.|||||.||.|||.|.||.|| ||.|| |.|.|.|.||||.
BL00816___yfh 90 TATGGGTATATTGACTTCCATTTCAAAGGATCTCTC-TGTTCCGATTTCG 138
BSNT_01421___ 136 TCCGCAGGGCTTCTTGTCACGGCTTATGCGGCAAGCGTTTGTTTGACAGG 185
||..|.||.||..|.||.|||||.|||||||.||||||.|||.||||.||
BL00816___yfh 139 TCTACCGGCCTATTGGTAACGGCATATGCGGGAAGCGTCTGTCTGACGGG 188
BSNT_01421___ 186 GCCACTCGTCACCATCATTTCCGTCAAGCTTCCGAGAAAGCCTGTGCTTC 235
|||..||||||||||..||||.||.||..|.|||.|.||.||.|| .||.
BL00816___yfh 189 GCCGATCGTCACCATATTTTCGGTAAAAATGCCGCGCAAACCGGT-ATTG 237
BSNT_01421___ 236 TTGGGCTT-ATG-GCGATATTTATCCTTTCAAACCTGATGAGCGCA---- 279
.|.||||| ||| |.| |.|||.|.||.||.| |||.||.||
BL00816___yfh 238 ATCGGCTTGATGAGTG-TGTTTGTACTGTCGA-----ATGCGCTCAGTTT 281
BSNT_01421___ 280 -CTGGCGCCGA--------ATTTTGCGGTATTGGCCATTTCAAGAATTTT 320
|||||||||| |||||| |||| |.||||||||..|
BL00816___yfh 282 CCTGGCGCCGAACTTCACCATTTTG-----TTGG---TCTCAAGAATCCT 323
BSNT_01421___ 321 ATCTGCGTCCATTCACGGCGCTTTCTTCGCGATTGCCATGGTATTCGCAA 370
|||.||.||||||||.||.||.||.||.||.|...|.|||||.||||..|
BL00816___yfh 324 ATCCGCATCCATTCATGGTGCATTTTTTGCAACGACAATGGTGTTCGTCA 373
BSNT_01421___ 371 GTGAAATGGTTCCGCCGGAAAAGCGTGCTGCAGCTGCTGCTTCAATGAAC 420
|.|||||||..|||||.|||||.||.||.||.|||||.||||||||||||
BL00816___yfh 374 GCGAAATGGCACCGCCCGAAAAACGGGCCGCCGCTGCCGCTTCAATGAAC 423
BSNT_01421___ 421 GGCGGACTGACAGTGGCTCTAATGCTTGGTGTTCCATTCGGCTCTTATCT 470
|||||..||||..|.||.||.|||||.||.||.||.||.||.||||||.|
BL00816___yfh 424 GGCGGCTTGACCATCGCCCTGATGCTCGGCGTCCCGTTTGGTTCTTATTT 473
BSNT_01421___ 471 CGGAGATGTCCTGAATTGGAGAGCGG--TGTTTTCC--ATCATTACGGCT 516
.||.|||.|..|.||.|| |||| .|||||.| ||.|| |.
BL00816___yfh 474 AGGCGATCTTTTCAACTG----GCGGATCGTTTTTCTGATGAT-----CG 514
BSNT_01421___ 517 CTTGGTGTCATCGGATTTTTAGGCCT--------TATGGCTG-CCGTGCC 557
|.|| |.|||||||..|.||||| |.|||||| |.|||||
BL00816___yfh 515 CATG----CCTCGGATTGATCGGCCTCGCCGGCATTTGGCTGACGGTGCC 560
BSNT_01421___ 558 GAACAGAAAACCAAAAGTGATCCC--AATGCTTATGAATGAGTGGGGGGT 605
|.||||||||||.|||||..|||| ||| |.||..||||.||||..||
BL00816___yfh 561 GCACAGAAAACCGAAAGTTGTCCCTAAAT--TGATCCATGAATGGGATGT 608
BSNT_01421___ 606 TTTTAAACACAAACAAGTGCTGTTTTCCTTCGCGATTACCATTTTAGGCT 655
.||||||.|.||||||||.||.|||||.||.||.||.||.||.||.||||
BL00816___yfh 609 GTTTAAAAATAAACAAGTCCTTTTTTCTTTTGCTATCACGATCTTTGGCT 658
BSNT_01421___ 656 ATTCCGGTGTCTTTATCGCCTACACCTTTATCGAACCCATTTTAAGGCAT 705
||||.||.||.||.|||||||||||.|||||.|||||.||..|..|||||
BL00816___yfh 659 ATTCGGGCGTATTCATCGCCTACACGTTTATTGAACCGATGCTGCGGCAT 708
BSNT_01421___ 706 TCAGCCGGATTCAGCACGGTTGGCATTACAGGTGCTCTCTTTGCGTATGG 755
||.|||||.|||..||...|.||||||||||..||.||.||.||.||.||
BL00816___yfh 709 TCTGCCGGTTTCGACAGTCTCGGCATTACAGCCGCCCTTTTCGCCTACGG 758
BSNT_01421___ 756 ATTGGGAGGCGTTGCCGGGAATTTCTTTGCTGGAAAAGTACCGCTGCCTT 805
.||.||.||.||.|.|||.|||||||..||.|||||.||.|||.|.|...
BL00816___yfh 759 GTTTGGCGGGGTCGTCGGCAATTTCTACGCCGGAAAGGTGCCGTTTCACC 808
BSNT_01421___ 806 TGCTGACTCGGACGATGATCGGCGTAATGATCGGTTTAATCGGTG-TTCT 854
||.|.||.||..|.||||||||.||.|||||||...|.|| ||.| |.||
BL00816___yfh 809 TGTTAACCCGCTCCATGATCGGGGTGATGATCGCGCTCAT-GGCGATCCT 857
BSNT_01421___ 855 GGCTGTATTTCCTT----------ACATCGCCATTTAC--CCGGCTGCAG 892
.||.|..||||||| ||||| | ||||| |
BL00816___yfh 858 TGCGGCCTTTCCTTTTGTCAGCGGACATC--------CTGCCGGC----G 895
BSNT_01421___ 893 CCATTGTGGCAACGTTCCTATT------CGGGGCATGCGCATTCGGCACG 936
||||..|.|..|||||..|||| |||.||.|.|||.|||||.|||
BL00816___yfh 896 CCATCATCGTGACGTTTTTATTCGGAGCCGGCGCGTTCGCGTTCGGAACG 945
BSNT_01421___ 937 CCGCCTCTTCTGCAAACAAAGGTCATTTCCTCATCTGAGGGCGGCACAAC 986
..|||.|||.||||||||||||||.|..|..|.|||||...|||.|||||
BL00816___yfh 946 GTGCCCCTTTTGCAAACAAAGGTCGTGGCTGCGTCTGAACACGGAACAAC 995
BSNT_01421___ 987 CATTGCCGCAGCTGTCAGCGTATCAGCATTTAACCTTGCCAATGCCCTTG 1036
.||.|||.|..|.||||||.|..|.|||||||||.|.|||||.||.||.|
BL00816___yfh 996 GATCGCCACCTCCGTCAGCATCGCTGCATTTAACTTGGCCAACGCGCTCG 1045
BSNT_01421___ 1037 GTGCATGGATCGGCGGAATGATTTTAAACGGAACAGGCTCT---TATTCC 1083
|.||.||||||||||||.|.|||.|.||.|.|.|||..||| .||.||
BL00816___yfh 1046 GGGCTTGGATCGGCGGACTCATTCTTAATGCATCAGAGTCTACACATACC 1095
BSNT_01421___ 1084 TGGCTGTTTGCAGGCGGTGCGCTTATGACTGCATGCGGACTTGTGCTTTC 1133
|.|| ..||||||||||||||||||
BL00816___yfh 1096 TTGC----CACAGGCGGTGCGCTTATGA---------------------- 1119
BSNT_01421___ 1134 TACCTTCGCACACTTATCAGAAAAGAAGAGCGTCTACGAATATCAAGTCA 1183
BL00816___yfh 1119 -------------------------------------------------- 1119
BSNT_01421___ 1184 ATAAAGGGTAA 1194
BL00816___yfh 1119 ----------- 1119
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