Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05005 and BL00819

See Amino acid alignment / Visit BSNT_05005 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:12
# Commandline: needle
#    -asequence dna-align/BSNT_05005___yvaA.1.5803.seq
#    -bsequence dna-align/BL00819___yvaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05005___yvaA-BL00819___yvaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05005___yvaA-BL00819___yvaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05005___yvaA
# 2: BL00819___yvaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1145
# Identity:     742/1145 (64.8%)
# Similarity:   742/1145 (64.8%)
# Gaps:         163/1145 (14.2%)
# Score: 2311.5
# 
#
#=======================================

BSNT_05005___      1 TTGATAACGCTTTTAAAGGGGAGAAGAAAAGTGGATACGATCAAGGTT--     48
                                                |..|||||      |||||||  
BL00819___yva      1 ---------------------------ATGGTGGA------CAAGGTTCG     17

BSNT_05005___     49 ----GGAATATTAGGATACGGATTGTCCGGTTCTGTTTTTCACGGGCCGC     94
                         ||.||||||||||||||.|||||||||||.||.|||||.|.|||..
BL00819___yva     18 CACAGGGATATTAGGATACGGTTTGTCCGGTTCGGTGTTTCATGCGCCTT     67

BSNT_05005___     95 TGCTGGAT--GTTCTGGATGAATATCAAATCAGCAAAATCATGACATCTC    142
                     |..|  ||  ||..|.||.||.|||.|.||..|.||..|.|||||.||..
BL00819___yva     68 TATT--ATCAGTGTTAGAAGATTATGAGATTCGAAAGGTTATGACTTCAA    115

BSNT_05005___    143 GGACAGAAGAAGTGAAACGGGACTTTCCAGATGCTGA---GGT-TGTACA    188
                     |||.||||.||||.||||.||||.|.||.||.||.||   ||| .|||| 
BL00819___yva    116 GGAAAGAACAAGTCAAACAGGACCTCCCCGAAGCAGAAGCGGTCAGTAC-    164

BSNT_05005___    189 TGAGCTTGAGGAAATCACAAATGACCCTGCCATTGAGCTTGTCATTGTCA    238
                        |.|.||.||.||||||||.||.||.|.||||||.||.|||||.||.|
BL00819___yva    165 ---GATCGAAGACATCACAAAAGATCCGGACATTGATCTCGTCATCGTGA    211

BSNT_05005___    239 CCACCCCGAGCGGCCTTCATTACGAGCATGCTATGGC------ATGCATA    282
                     ||||.||||||||||||||||||||      .|||||      .|||||.
BL00819___yva    212 CCACGCCGAGCGGCCTTCATTACGA------AATGGCGAAAGAGTGCATC    255

BSNT_05005___    283 CAGGCCGGAAAACATGTTGTGATGGAAAAACCAATGACAGCAACAGCCGA    332
                     |..||||||||.|||||.||..|.|||||.||.||||||||||||||.||
BL00819___yva    256 CGCGCCGGAAAGCATGTCGTTCTTGAAAAGCCGATGACAGCAACAGCGGA    305

BSNT_05005___    333 AGAGGGGGAA----ACATTAAAAAGGGCTGCCG---ATGAAAAAGGCGTA    375
                     |||.|.||||    .||||||       |||||   |.|||||||||||.
BL00819___yva    306 AGAAGCGGAAGAGCTCATTAA-------TGCCGCGAAAGAAAAAGGCGTG    348

BSNT_05005___    376 TTATTAAGCGTATATCATAACCGACGCTGGGATAACGACTTTTTAACGAT    425
                     .|..|.|||||.|||||.||||||.|.|||||||||||||||||.|||||
BL00819___yva    349 CTTCTCAGCGTGTATCACAACCGAAGATGGGATAACGACTTTTTGACGAT    398

BSNT_05005___    426 TAAAAAGCTGATCTCTGAGGGATCTCTTGAAGATATCAATACATATCAAG    475
                     .|||.||||.|||...|||||....||||.|||..||||.||||..||.|
BL00819___yva    399 CAAACAGCTCATCAAAGAGGGGCGCCTTGGAGAGGTCAACACATTCCACG    448

BSNT_05005___    476 TTTCCTATGACCGCTACAGACCTGAAGTTCA---AGCGCGGTGGCGGGAA    522
                     ..|||||.|||||.|.|.|.|| |||..|||   |||||  |||.|.|||
BL00819___yva    449 CCTCCTACGACCGGTTCCGGCC-GAATGTCAGACAGCGC--TGGAGAGAA    495

BSNT_05005___    523 ---AAAGAA---GGCATTGCCACTGGTACGCTGTATGATCTCGGCTCCCA    566
                        ||||.|   ||    |.||  |||.|.|||||.|||.|.||.||.||
BL00819___yva    496 CAGAAAGGACCGGG----GTCA--GGTGCACTGTACGATTTAGGTTCACA    539

BSNT_05005___    567 CATCATAGACCAAACCCTGCATTTGTTTGGGATGCCTAAAGCCGTGACTG    616
                     |.|.||.||.||..|.||.|||||.||.||.|||||.||.|.|||.||.|
BL00819___yva    540 CTTGATCGATCAGGCGCTTCATTTATTCGGCATGCCGAACGGCGTCACCG    589

BSNT_05005___    617 CAAACGTGATGGCCCAGCGGGAAAATGCCGAAACGGTTGACTATTTTCAT    666
                     |..|.||||..||.|||.|.|..|||||.|||||.|..||.||.||.|||
BL00819___yva    590 CTCAAGTGACCGCTCAGAGAGCCAATGCGGAAACAGACGATTACTTCCAT    639

BSNT_05005___    667 TTAACCCTGGACTATGGCAAGCTTCAAGCCATTCTATACGGGGGATCAAT    716
                     .|.|.|||..||||||...|||..||||..|||||..||..|||.||.||
BL00819___yva    640 GTCATCCTTCACTATGATCAGCGCCAAGTGATTCTCCACTCGGGCTCGAT    689

BSNT_05005___    717 CGTTCCGGCAAACGGACCTCGTTATCAAATCCATGG----AAAAGATTCC    762
                     .||||||||.|||||.||.||.||.||||||||.||    |||.||    
BL00819___yva    690 TGTTCCGGCCAACGGCCCCCGCTACCAAATCCACGGCTCAAAAGGA----    735

BSNT_05005___    763 AGCTTTATCAAATACGGAATTGACGGACAGGAAGACGCACTCAGAGCGGG    812
                     ||||||||.|||||||||||.|||||.|||||.||.||||||||||||||
BL00819___yva    736 AGCTTTATTAAATACGGAATCGACGGCCAGGAGGATGCACTCAGAGCGGG    785

BSNT_05005___    813 AAGAAAAC---CAGAGGATGACAGCTGGGGTGCAGATGATCCGGAGTTTT    859
                     ....||||   |||..|||||   .|||||.||.|||.|.||.||.|.||
BL00819___yva    786 TCATAAACCTGCAGGCGATGA---GTGGGGAGCCGATCAACCCGAATATT    832

BSNT_05005___    860 ACGGACAGCTTACAACCATTCG-TGGC-------TCCGGCAAAAAAAC--    899
                     ||||..|.||..|.| ||.||| .|||       ||.|| ||..||||  
BL00819___yva    833 ACGGGGAACTGGCCA-CAGTCGAAGGCGACGAGATCAGG-AAGGAAACCG    880

BSNT_05005___    900 -AGAAACGATCCCATCAGTAAATGGCTCCTACCTTACTTATTACCGCAAA    948
                      .||||||.||||         .||.||.|||.|.|||||||||     |
BL00819___yva    881 TGGAAACGCTCCC---------GGGTTCATACTTAACTTATTAC-----A    916

BSNT_05005___    949 A-----TAGCGGAAAGCATACGGGAAGGTGCTGC-GC-TGCCAGTCACTG    991
                     |     |.||...|||.||.|..||||  ||.|| || ||||.|||||.|
BL00819___yva    917 AGCAGCTTGCTTCAAGTATTCTAGAAG--GCGGCAGCTTGCCTGTCACGG    964

BSNT_05005___    992 CTGAGGAAGGTATTA----ATGTCATCCGCATCATTGAAGCCGCGATGAA   1037
                     |.||.|||||    |    |.||||||||.|||||.|||||.|||...||
BL00819___yva    965 CGGAAGAAGG----ACGCGACGTCATCCGAATCATCGAAGCTGCGCAAAA   1010

BSNT_05005___   1038 AAGCAGTAAAGAGAAACGAACCA----TTATGCTGGAGC-ACTAA   1077
                     ||||     ||.||||||||.||    .|.|.||..|.| |.|||
BL00819___yva   1011 AAGC-----AGCGAAACGAATCAAACGGTGTTCTTAAACAAATAA   1050


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