Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04954 and BL00820

See Amino acid alignment / Visit BSNT_04954 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:08
# Commandline: needle
#    -asequence dna-align/BSNT_04954.1.5803.seq
#    -bsequence dna-align/BL00820.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04954-BL00820.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04954-BL00820.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04954
# 2: BL00820
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 162
# Identity:     107/162 (66.0%)
# Similarity:   107/162 (66.0%)
# Gaps:          21/162 (13.0%)
# Score: 326.5
# 
#
#=======================================

BSNT_04954         1 ATGGATCAG-GTTTTTATAGAGGAAGTCGTAAAACAGATCGGCAATTTGG     49
                     ||||| ||| |..||.||.|||||||..|..|||||.|||||||||.|.|
BL00820            1 ATGGA-CAGCGCATTCATTGAGGAAGCAGCGAAACAAATCGGCAATGTCG     49

BSNT_04954        50 GGTTTCCCGCGCTG-ATT-GCAATGTATCTGCTGACCCGATTCGAAAAGA     97
                     |.|||||  .|||| ||| |||||.||..||||.||.||.||.|||||||
BL00820           50 GCTTTCC--AGCTGTATTGGCAATTTACTTGCTCACTCGTTTTGAAAAGA     97

BSNT_04954        98 AGTTTGATCAACTAATAGAACT----AATGACAGAACTGAAA--GATCAT    141
                     |..|.|||.||||.||.||.||    ||.||.|.||.|||||  |||.||
BL00820           98 AAATCGATGAACTGATCGAGCTGATCAAAGAAAAAAATGAAACCGATGAT    147

BSNT_04954       142 GCAAAAAAATAA    153
                     ..|         
BL00820          148 TGA---------    150


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.