Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04956 and BL00821

See Amino acid alignment / Visit BSNT_04956 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:08
# Commandline: needle
#    -asequence dna-align/BSNT_04956___oxdC.1.5803.seq
#    -bsequence dna-align/BL00821___oxdC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04956___oxdC-BL00821___oxdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04956___oxdC-BL00821___oxdC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04956___oxdC
# 2: BL00821___oxdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1183
# Identity:     879/1183 (74.3%)
# Similarity:   879/1183 (74.3%)
# Gaps:          53/1183 ( 4.5%)
# Score: 3129.0
# 
#
#=======================================

BSNT_04956___      1 ATG--AAAAAACAAAATGACATTCCGCAGCCAATTAGAGGAGACAAAGGA     48
                     |||  ||||||||||  .|.|||||.|||||.||.||||||||.||||||
BL00821___oxd      1 ATGGAAAAAAACAAA--CAAATTCCACAGCCGATCAGAGGAGAAAAAGGA     48

BSNT_04956___     49 GC---AACGGTAAAAATCCCGCGCAATATTGAAAGAGACCGGCAAAACCC     95
                     ||   ||||   |||||.||||.|||..||||..|.|||||.||||||||
BL00821___oxd     49 GCGGAAACG---AAAATTCCGCACAACGTTGAGCGCGACCGCCAAAACCC     95

BSNT_04956___     96 TGATATGCTCGTTCCGCCTGAAACCGATCATGGCACCGTCAGC--AATAT    143
                     .||.||||||||.||||||||||||||.||.||.||.||  ||  ||.||
BL00821___oxd     96 GGACATGCTCGTACCGCCTGAAACCGACCACGGAACGGT--GCCAAACAT    143

BSNT_04956___    144 GAAGTTTTCGTTCTCTGATACTCATAACCGATTAGAAAAAGGCGGATATG    193
                     |||.|||||.||.||.|||...||||||||..|.||||||||||||||||
BL00821___oxd    144 GAAATTTTCATTTTCCGATGTCCATAACCGTCTTGAAAAAGGCGGATATG    193

BSNT_04956___    194 CCCGTGAAGTGACAGTACGTGAATTGCCGATTTCAGAAAACCTTGCATCC    243
                     |.||.|||||.|||||.||.||..|||||||||||||.||.|||||.||.
BL00821___oxd    194 CACGGGAAGTCACAGTTCGCGAGCTGCCGATTTCAGACAAGCTTGCTTCT    243

BSNT_04956___    244 GTAAATATGCGGCTGAAGCCAGGTGCGATTCGCGAGCTTCACTGGCATAA    293
                     ||.||.|||.|||||||.||.||.||.||..|.|||||.|||||||||||
BL00821___oxd    244 GTCAACATGAGGCTGAAACCTGGGGCCATCAGGGAGCTGCACTGGCATAA    293

BSNT_04956___    294 AGAAGCTGAATGGGCTTATATGATTTACGGAAGTGCAAGAGTCACAATTG    343
                     .|||||.||||||||.||||||.|.|||||||..|||.|..|.||...||
BL00821___oxd    294 GGAAGCCGAATGGGCGTATATGCTGTACGGAAAAGCACGGATTACGTCTG    343

BSNT_04956___    344 TAGATGAAAAAGGGCGCAGCTTTATTGACGATGTAGGTGAAGGAGACCTT    393
                     |.||..||.|.||..|.|.|||||||||.|||||....||||||||.||.
BL00821___oxd    344 TTGACCAAGACGGCAGAAACTTTATTGAAGATGTGAAAGAAGGAGATCTC    393

BSNT_04956___    394 TGGTACTTCCCGTCAGGCCTGCCGCACTCCATCCAAGCGCTGGAGGAGGG    443
                     |||||||||||||||||.||||||||.||.||.|||||.||.||.||.||
BL00821___oxd    394 TGGTACTTCCCGTCAGGTCTGCCGCATTCAATTCAAGCACTTGAAGACGG    443

BSNT_04956___    444 A-GCTGAGTTCCTGCTCGTATTTGACGATGGATCATTCTCTGAAAACAGC    492
                     | || ||.||||||||.||.||.||.||.||.||.|||||||||||||||
BL00821___oxd    444 ATGC-GAATTCCTGCTTGTCTTCGATGACGGCTCCTTCTCTGAAAACAGC    492

BSNT_04956___    493 ACGTTCCAGCTGACAGATTGGCTGGCCCACACTCCAAAAGAAGTCATTGC    542
                     ||.||||||.|||||||||||||||||||.||.||..|.||.||.|||||
BL00821___oxd    493 ACCTTCCAGGTGACAGATTGGCTGGCCCATACGCCTGATGAGGTGATTGC    542

BSNT_04956___    543 TGCGAACTTTGGCGTGACAAAAGAAGAGATTGCCAATTTACCTGGCAAAG    592
                     .||.|||||.|||.|..|||||||.|...|.|||..|.|.||.|...|||
BL00821___oxd    543 CGCAAACTTCGGCATTTCAAAAGACGTCGTCGCCTCTCTTCCAGTTGAAG    592

BSNT_04956___    593 AAAAATATATATTTGAA-AACCAACTTCCTGGCAGT-TTAAAAGATGATA    640
                     ||||.|||||.||..|| ||.|.| |.||||||.|| ||.|.| |.||.|
BL00821___oxd    593 AAAAGTATATTTTCCAAGAAGCGA-TCCCTGGCTGTCTTGAGA-AAGACA    640

BSNT_04956___    641 TTGTGGAAGGGCCAAATGGCGAA--GTGCCT-TATCCATTT-ACTTACCG    686
                     ..||.|||.|.||.||.|  |||  ||.||| ||||  ||| |..|||  
BL00821___oxd    641 AAGTTGAAAGCCCGAACG--GAACGGTACCTCTATC--TTTCAGCTAC--    684

BSNT_04956___    687 ACTT--CTTGAACAAGAGCCGATCGAATCTGAGGGAGGAAATGTATACAT    734
                     |.||  ||||||||.||.|||||...|||....||||||||.||||..||
BL00821___oxd    685 AATTTGCTTGAACAGGAACCGATTATATCCATCGGAGGAAAAGTATGGAT    734

BSNT_04956___    735 TGCAGATTCGACAAACTTCAAAGTGTCTAAAACCATCGCATCAGCGCTCG    784
                     |||.|||||.||.||||||||||..||.|||||.|||||.||.|||.|.|
BL00821___oxd    735 TGCCGATTCCACGAACTTCAAAGCATCGAAAACGATCGCTTCTGCGTTAG    784

BSNT_04956___    785 TAACAGTAGAACCCGGCGCCATGAGAGAACTGCACTGGCATCCGAATACC    834
                     |...|||.|||||.||.|.|||..|.||.||||||||||||||||||||.
BL00821___oxd    785 TGGAAGTCGAACCTGGAGGCATCCGGGAGCTGCACTGGCATCCGAATACA    834

BSNT_04956___    835 CACGAATGGCAATACTACATCTCCGGTAAAGCTAGAATGACCGTTTTTGC    884
                     .||||||||||.||.|||||.|||||..||||.|.||||||.|||||.||
BL00821___oxd    835 GACGAATGGCAGTATTACATTTCCGGACAAGCGAAAATGACGGTTTTCGC    884

BSNT_04956___    885 ATCTGACGGCCATGCCAGAACGTTTAATTACCAAGCCGGTGATGTCGGAT    934
                     ..|.|||||.|||||||||||.|||||||||||.|||||.||||||||.|
BL00821___oxd    885 TGCCGACGGGCATGCCAGAACATTTAATTACCAGGCCGGAGATGTCGGCT    934

BSNT_04956___    935 ATGTACCATTTGCAATGGGTCATTACGTTGAAAACATCGGGGATGAACCG    984
                     ||||.||.||.||||||||.||.|||||..||||.|..||.|||||.|||
BL00821___oxd    935 ATGTGCCGTTCGCAATGGGACACTACGTCCAAAATACAGGAGATGAGCCG    984

BSNT_04956___    985 CTTGTCTTTTTAGAAATCTTCAAAGACGACCATTATGCTGATGTATCTTT   1034
                     |||...||..|.|||||.||||||||||||||.||||||||.||.||.||
BL00821___oxd    985 CTTCGGTTCCTCGAAATTTTCAAAGACGACCACTATGCTGACGTTTCGTT   1034

BSNT_04956___   1035 AAACCAATGGCTTGC-CATGCTTCCTGAAACATTTGTTCAAGC--ACACC   1081
                     ||||||||||||.|| |.|| ||||.|||....||||.|  ||  .||||
BL00821___oxd   1035 AAACCAATGGCTCGCGCTTG-TTCCGGAAGAGCTTGTCC--GCCAGCACC   1081

BSNT_04956___   1082 TTGACTTGGGCAAAGACTTTACTGATGTGCTTTCAAAAGAAAAGCACCCA   1131
                     |||||.|.||||..||.|||||..|..||||.||.|||||||||||.||.
BL00821___oxd   1082 TTGACGTCGGCAGCGAATTTACAAAAATGCTCTCTAAAGAAAAGCATCCG   1131

BSNT_04956___   1132 GTAGTGAAA------AAGAAATGCAGTAAATAA   1158
                     ||.||.|||      ||||||     |||    
BL00821___oxd   1132 GTCGTCAAATTTGATAAGAAA-----TAA----   1155


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