Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00416 and BL00834

See Amino acid alignment / Visit BSNT_00416 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:03
# Commandline: needle
#    -asequence dna-align/BSNT_00416___ybfQ.1.5803.seq
#    -bsequence dna-align/BL00834___ybfQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00416___ybfQ-BL00834___ybfQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00416___ybfQ-BL00834___ybfQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00416___ybfQ
# 2: BL00834___ybfQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1002
# Identity:     709/1002 (70.8%)
# Similarity:   709/1002 (70.8%)
# Gaps:          66/1002 ( 6.6%)
# Score: 2395.0
# 
#
#=======================================

BSNT_00416___      1 ATGGAAAAACAATACAGAGTATTACTTTACTATAAATATGTTCCGATTGA     50
                     |||.|.||.||||||.|||||||..|.||.|||||||||||||..||.||
BL00834___ybf      1 ATGAAGAATCAATACCGAGTATTGTTGTATTATAAATATGTTCATATCGA     50

BSNT_00416___     51 AGATCCAGAGGCGTTTAG----AGAGCAGCATCTGGCTTTTTGTAAGGAG     96
                     ..|.||.|| ||..||.|    |||.|| |.||..|  ||.||.||.||.
BL00834___ybf     51 TAACCCTGA-GCAATTTGCCGAAGATCA-CCTCAAG--TTCTGCAAAGAT     96

BSNT_00416___     97 CTTGGTTTGTTAGGCCGTATCCTTGTTTCTTCTGAAGGAATTAACGGTAC    146
                     .|.||..||...||.||.||||||||..|...|||||||||.|||||.||
BL00834___ybf     97 TTGGGGCTGAAGGGGCGCATCCTTGTGGCGGGTGAAGGAATAAACGGAAC    146

BSNT_00416___    147 GGTATCAGGTACGGTTGAACAGACTGAAAAATATATG---GAAACAATG-    192
                     .||.|||||.||.||.||.|||||.||....||||||   ||   |||| 
BL00834___ybf    147 CGTGTCAGGAACCGTAGAGCAGACAGACCGCTATATGAGTGA---AATGA    193

BSNT_00416___    193 AAAGCTGATCCTCGCTTTGCGGACATGGTATTTAAAATTGATGAAGCAGA    242
                     ||||| |||||.|||||||..|||||||||||||||||.||||||.||||
BL00834___ybf    194 AAAGC-GATCCCCGCTTTGAAGACATGGTATTTAAAATCGATGAATCAGA    242

BSNT_00416___    243 AGGCCATGCCTTCAAAAAAAT-CTTCGTCCGCCATAAAAAAGAGCTTGTA    291
                     |||.||.||.||||||||||| |.| |||||||||....|.|||||.||.
BL00834___ybf    243 AGGGCACGCTTTCAAAAAAATGCAT-GTCCGCCATCGCGATGAGCTGGTG    291

BSNT_00416___    292 ACGCTTCGTCTTGAAGATGATGTCGATCCGAACGAAACAACAGGCCAGCA    341
                     |||||.||.||.|||||||||.||||||||||||||..||||||..|..|
BL00834___ybf    292 ACGCTCCGCCTGGAAGATGATATCGATCCGAACGAATTAACAGGAAAATA    341

BSNT_00416___    342 TTTGAAGCCTGCAGAATTTTATGAGAAGATGCAGGATCCAAACACAATTG    391
                     ..||.||||...|||||||||||||..|||||||.|...|.|.||.||||
BL00834___ybf    342 CCTGGAGCCAAAAGAATTTTATGAGGCGATGCAGCAGGAAGATACGATTG    391

BSNT_00416___    392 TCATCGACGCGCGTAACGATTACGAGTATGACCTTGGCCATTTCAGAGGT    441
                     ||.|||||||.||.|||||.||.|||||.||..|.||.||||||.|.||.
BL00834___ybf    392 TCGTCGACGCACGGAACGACTATGAGTACGATTTGGGGCATTTCCGCGGA    441

BSNT_00416___    442 GCGGTCCGTCCTGACATCGAAGCCTTCCGTGAATTACCTGAATGGATTGA    491
                     |||.||.|.||.|||||..||||.|||||.|||||||||||.|||||...
BL00834___ybf    442 GCGATCAGACCGGACATTAAAGCGTTCCGCGAATTACCTGAGTGGATCCG    491

BSNT_00416___    492 AGAGCACAAAGATATGCTTGAAGGCAAAAAGATTTTAACGTACTGTACAG    541
                     .||..|||||||.|.|||.||||||||.||.||.||.||.|||||.||.|
BL00834___ybf    492 CGATAACAAAGAAAAGCTCGAAGGCAAGAAAATATTGACTTACTGCACGG    541

BSNT_00416___    542 GCGGCGTGCGCTGTGAAAAGTTCTCAGGATGGCTGGTGAAGCAAGGCTTT    591
                     ||||..|.|||||.|||||.||.||||||||||||...||..||||.|||
BL00834___ybf    542 GCGGAATCCGCTGCGAAAAATTTTCAGGATGGCTGAAAAAAGAAGGATTT    591

BSNT_00416___    592 GAAGATGTAGCTCAGCTTGATGGCGGAATCGTGACATACGGAAAAGATCC    641
                     |||||.||..|.||||||.|.|||||.||.||.||.|||||||||||.||
BL00834___ybf    592 GAAGACGTGTCCCAGCTTCACGGCGGTATTGTAACGTACGGAAAAGACCC    641

BSNT_00416___    642 AGAGGTGCAAGGCAAGCTTTGGGACGGCCAGTGCTACGTATTTGATGAAA    691
                     .||.||.|||||..|.||.||||||||..|.|||||.||.||.|||||||
BL00834___ybf    642 TGAAGTTCAAGGTGAACTGTGGGACGGGAAATGCTATGTTTTCGATGAAA    691

BSNT_00416___    692 GAATCAGCGTGCCTGTCAACCGTGTC-----GAGCATGTGATTGTCGGCA    736
                     ||||||||||.||.|||||     ||     |||||.||.||||||||.|
BL00834___ybf    692 GAATCAGCGTTCCGGTCAA-----TCAGAAAGAGCACGTCATTGTCGGAA    736

BSNT_00416___    737 AGGACTACTTTACAGGAGAACCGTGTGAGCGTTATGTGAACTGCGCAAAT    786
                     |.||.||.||.||.||.||.||.||.|||||.|||||.|||||||||||.
BL00834___ybf    737 AAGATTATTTCACCGGCGAGCCTTGCGAGCGCTATGTCAACTGCGCAAAC    786

BSNT_00416___    787 CCATCTTGCAATAAAAAAATGATATGCACACCGGAAAATGAGTATAAATA    836
                     ||....|||||.||..|.||.||.|||.|....|||||||||.|....||
BL00834___ybf    787 CCGGAATGCAACAAGCAGATCATCTGCTCTGAAGAAAATGAGCACCGCTA    836

BSNT_00416___    837 TATGCGCAGCTGCAGCCACGAATGCCG----CACGAACCCAAGAAACCTG    882
                     |.||||..||||||..|||||.|||||    |    |.||..|.||||||
BL00834___ybf    837 TTTGCGGGGCTGCACGCACGAGTGCCGGGTTC----ATCCGCGCAACCTG    882

BSNT_00416___    883 TATGTGAAAGAGCA-------TAATATGACAGAAGAAGAAGTAAACGCAA    925
                     |||||.||||||||       |       ||||||||||.||    ||||
BL00834___ybf    883 TATGTCAAAGAGCACGGCCTTT-------CAGAAGAAGAGGT----GCAA    921

BSNT_00416___    926 GACTGGC------AGCGATTGAAA-CAGAAGATCACGCTGCTGCTG-AAT    967
                     ||..|.|      |||   ||||| .|||.||.||.||.|| ||.| .||
BL00834___ybf    922 GAGAGACTCGAAAAGC---TGAAAGAAGAGGAACATGCAGC-GCAGTCAT    967

BSNT_00416___    968 AA    969
                     ||
BL00834___ybf    968 AA    969


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