Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04449 and BL00839

See Amino acid alignment / Visit BSNT_04449 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_04449___pckA.1.5803.seq
#    -bsequence dna-align/BL00839___pckA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04449___pckA-BL00839___pckA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04449___pckA-BL00839___pckA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04449___pckA
# 2: BL00839___pckA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1611
# Identity:    1196/1611 (74.2%)
# Similarity:  1196/1611 (74.2%)
# Gaps:          54/1611 ( 3.4%)
# Score: 4300.0
# 
#
#=======================================

BSNT_04449___      1 ATGAACTCAGTTGATTTGACCGCTGATTTACAAGCCTTATTAAC------     44
                     |||||.||.||.|||||.||..||||.||||||.|..|||||||      
BL00839___pck      1 ATGAATTCTGTAGATTTAACAACTGACTTACAAACGCTATTAACGGGCGA     50

BSNT_04449___     45 --ATGTCCAAATGTGCGTCATAATTTATCTGCAGCACA----GCTAACAG     88
                       |.||.||.|||        ||.|||||.|...|.||    |.|    |
BL00839___pck     51 AAACGTTCAGATG--------AACTTATCCGTTCCCCATTTGGTT----G     88

BSNT_04449___     89 AAAAAGTCCTCTCCCGAAACGAAGGCATTTTAACATCCACAGGTGCTGTT    138
                     ||||..||||....||.||.|||||..|.||.|||||..|.||.||.||.
BL00839___pck     89 AAAAGATCCTTGAGCGCAAAGAAGGAGTCTTGACATCTTCCGGAGCCGTG    138

BSNT_04449___    139 CGCGCGACAACAGGCGCTTACACAGGACGCTCACCTAAAGATAAATTCAT    188
                     ||.||.|||||.||..|.|||||.||.|||||.||.|||||.||||||||
BL00839___pck    139 CGGGCAACAACCGGTACATACACCGGCCGCTCGCCAAAAGACAAATTCAT    188

BSNT_04449___    189 CGTGGAGGAAGAAAGCACGAAAAATAAGATCGATTGGGGCCCGGTGAATC    238
                     .|||||.||||..|||||.||..|.||.||||||||||||.|.||.||.|
BL00839___pck    189 TGTGGAAGAAGCGAGCACAAAGGACAAAATCGATTGGGGCGCAGTAAACC    238

BSNT_04449___    239 AGCCCATTTCAGAAGAAGCGTTTGAGCGGCTGTATACGAAAGTTGTCAGC    288
                     ||||.||||||||||..||.|||||.||||||||..|.|||||..||.||
BL00839___pck    239 AGCCGATTTCAGAAGCCGCCTTTGACCGGCTGTACGCAAAAGTGCTCGGC    288

BSNT_04449___    289 TATTTAAAGGAGCGAGATGAACTGTTTGTTTTCGAAGGATTTGCCGGAGC    338
                     |||||||||||.||.||||||.|||.|||.||.|||||.|||||.|||||
BL00839___pck    289 TATTTAAAGGAACGCGATGAATTGTATGTATTTGAAGGGTTTGCAGGAGC    338

BSNT_04449___    339 AGACGAGAAATACAGGCTGCCGATCACTGTCGTAAATGAGTTCGCATGGC    388
                     ||||||.||||||.||||.|||||.|||||.||.||.||||||||.||||
BL00839___pck    339 AGACGAAAAATACCGGCTTCCGATTACTGTTGTCAACGAGTTCGCCTGGC    388

BSNT_04449___    389 ACAATTTATTTGCGCGGCAGCTGTTTATCCGTCCGGAAGGAAATGATAAG    438
                     ||||..|.|||||..|.|||.||||.|||.|.||.||||.|.|||||||.
BL00839___pck    389 ACAACCTGTTTGCAAGACAGTTGTTCATCAGACCTGAAGAACATGATAAA    438

BSNT_04449___    439 AAAACAGTTGAGCAGCCGTTCACCATTCTTTCTGCTCCGCACTTCAAAGC    488
                     |||.|.|..||.||||||||.||.||||||||.||||||||.||||||||
BL00839___pck    439 AAACCTGAAGAACAGCCGTTTACGATTCTTTCAGCTCCGCATTTCAAAGC    488

BSNT_04449___    489 GGATCCAAAAAC----AGACGGCACTCA-TTCCGAAACGTTTATTATTGT    533
                     .|||||    .|    .|||||.|| || .||.|||||||||||.||.||
BL00839___pck    489 CGATCC----GCTCGTTGACGGAAC-CAGATCTGAAACGTTTATCATCGT    533

BSNT_04449___    534 CTCTTTCGAAAAGCGGACAATTTTAATCGGCGGAACTGAGTATGCCGGTG    583
                     .||.||.||.||||||||.||.||||||||.||.||.||.||||||||.|
BL00839___pck    534 GTCGTTTGAGAAGCGGACGATCTTAATCGGAGGCACCGAATATGCCGGAG    583

BSNT_04449___    584 AAATGAAGAAGTCCATTTTCTCCATTATGAATTTCCTGCTGCCTGAAAGA    633
                     |.|||||.||.||.|||||.||.|||||||||||.||.|||||||||..|
BL00839___pck    584 AGATGAAAAAATCGATTTTTTCTATTATGAATTTTCTTCTGCCTGAACAA    633

BSNT_04449___    634 GATATTTTATCTATGCACTGCTCCGCCAATGTCGGTGAAAAAGGC-GATG    682
                     .|.|||.||.|.||||||||.||.||.||..|.||.||..||||| ||..
BL00839___pck    634 AACATTCTACCGATGCACTGTTCGGCAAACATTGGCGAGGAAGGCGGAAC    683

BSNT_04449___    683 TCGCCCTTTTCTTCGGACTGTCAGGAACAGGAAAGACCACCCTGTCGGCA    732
                     | ||.||.|||||||||.|||||||.|||||.||.||.||.||.||.||.
BL00839___pck    684 T-GCTCTCTTCTTCGGATTGTCAGGTACAGGCAAAACGACGCTTTCCGCC    732

BSNT_04449___    733 GATGCTGACCGCAAGCTGATCGGTGACGATGAACATGGCTGGTCTGATAC    782
                     |||.|..|.||.|||||||||||.|||||.|||||.||||||||....||
BL00839___pck    733 GATCCGAAGCGGAAGCTGATCGGCGACGACGAACACGGCTGGTCCAGCAC    782

BSNT_04449___    783 AGGCGTCTTTAATATTGAAGGCGGGTGCTACGCTAAGTGCATTCATTTAA    832
                     ||||||.||.||.||||||||.||.||||||||.||.||||||.|.||||
BL00839___pck    783 AGGCGTTTTCAACATTGAAGGAGGCTGCTACGCCAAATGCATTAACTTAA    832

BSNT_04449___    833 GCGAGGAAAAGGAGCCGCAAATCTTTAACGCGATCCGCTTCGGGTCTGTT    882
                     ||||.|||||.||.|||||.||.|..||.||||||||||||||.||.|||
BL00839___pck    833 GCGAAGAAAAAGAACCGCAGATTTACAATGCGATCCGCTTCGGTTCCGTT    882

BSNT_04449___    883 CTCGAAAATGTCGTTGTGGATGA-AGATACACGCGA-AGCC-AATTATGA    929
                     ||||||||||||   ||||.||| ||..|.||..|| |||| .|.|||..
BL00839___pck    883 CTCGAAAATGTC---GTGGTTGACAGCAAAACCGGAGAGCCGGACTATTC    929

BSNT_04449___    930 TGATTCCTTCTATACTGAAAACACGCGGGCAGCTTACCCGATTCATATGA    979
                     .||.||.|||||.||.||||||||..|.||.||||||||||||.|...||
BL00839___pck    930 CGACTCATTCTACACGGAAAACACTAGAGCGGCTTACCCGATTGACGCGA    979

BSNT_04449___    980 TTGACAACATCGTGACTCCAAGCATGGCCGGCCATCCGTCAG-CAATTGT   1028
                     |||||||||||||.|..||.|||||.||.|..||.||| ||| |.||.||
BL00839___pck    980 TTGACAACATCGTCAAGCCGAGCATCGCAGCGCACCCG-CAGACCATCGT   1028

BSNT_04449___   1029 ATTTTTGACGGCTGATGCCTTCGGAGTCCTGCCGCCGATCAGCAAACTAA   1078
                     |||||||||.||.|||||.|||||.||.||.||.|||||||||||..|||
BL00839___pck   1029 ATTTTTGACCGCAGATGCTTTCGGCGTGCTTCCTCCGATCAGCAAGTTAA   1078

BSNT_04449___   1079 CGAAGGAGCAGGCCATGTACCATTTCTTGAGCGGTTACACGAGTAAGCTC   1128
                     ||||.||.||.||||||||.||||||.|||||||.||.||.||.||||||
BL00839___pck   1079 CGAAAGAACAAGCCATGTATCATTTCCTGAGCGGATATACAAGCAAGCTC   1128

BSNT_04449___   1129 GCCGGAACCGAACGTGGTGTCACGTCTCCTGAAACGACGTTCTCTACATG   1178
                     |||||.||||||||.||..||||..||||||||.|.||.|||||.||.||
BL00839___pck   1129 GCCGGCACCGAACGCGGGATCACCACTCCTGAAGCCACATTCTCGACCTG   1178

BSNT_04449___   1179 CTTCGGCTCACCGTTCCTGCCGCTTCCTGCTCACGTCTATGCTGAAATGC   1228
                     ||||||.|||||||||||.||||||||.||.||.||.||.||||||||||
BL00839___pck   1179 CTTCGGTTCACCGTTCCTCCCGCTTCCGGCACATGTGTACGCTGAAATGC   1228

BSNT_04449___   1229 TCGGCAAAAAGATCGATGAACACGGGGCAGACGT-TTTCTTAGTCAATAC   1277
                     ||||.|.|||.||||||||.|||||||..|.||| |||| |.||||||||
BL00839___pck   1229 TCGGAAGAAAAATCGATGAGCACGGGGTCGGCGTCTTTC-TCGTCAATAC   1277

BSNT_04449___   1278 CGGCTGGACCGGGGGCGGCTACGGCACAGGCGAACGAATGAAGCTTTCTT   1327
                     .|||||||||||.|||||.|||||.||.||.|||.||||||..||..|.|
BL00839___pck   1278 AGGCTGGACCGGCGGCGGATACGGAACCGGGGAAAGAATGAGCCTCGCAT   1327

BSNT_04449___   1328 ACACTAGAGCAATGGTCAAAGCAGCGATTGAAGGTAAATTAGAGGATGCT   1377
                     |.||.|||||.|||||..|.||.||.||.|||||..||.|.||..|.||.
BL00839___pck   1328 ATACGAGAGCGATGGTTCAGGCCGCAATAGAAGGAGAACTGGATAAAGCC   1377

BSNT_04449___   1378 GAAATGATAACTGACGATATTTTCGGCCTGCACATT--CCGGCCCATGTT   1425
                     |||||||..||||||...||||||||.||  .||||  ||.|.|||.|||
BL00839___pck   1378 GAAATGAGGACTGACCGCATTTTCGGACT--TCATTCACCTGTCCACGTT   1425

BSNT_04449___   1426 CCTGGCGTTCCTGATCATATCCTTCAGCCTGAAAACACGTGGACCAACAA   1475
                     ||.||.||.||||||||..|.|||.|.||.|..||.||.|||||  |.|.
BL00839___pck   1426 CCGGGTGTGCCTGATCAAGTGCTTGACCCGGCCAAAACTTGGAC--AGAT   1473

BSNT_04449___   1476 GGAA--GAATACAAAGAAAAGGCAGTCTACCTTGCAAATGAATTCAAAGA   1523
                     |.||  ||||||.|.|||||.||..||.||||.||.||.|.|||||||.|
BL00839___pck   1474 GAAAACGAATACGAGGAAAAAGCGATCCACCTGGCGAAAGCATTCAAACA   1523

BSNT_04449___   1524 GAACTTTAAAAAGTTCGCACATACCGATGCCATCGCCCAGGCAGGCGGCC   1573
                     |||.||.|||||||||.|..||||.||...|||||...|.||.||.||.|
BL00839___pck   1524 GAATTTCAAAAAGTTCTCCAATACGGAAAACATCGAAAAAGCCGGAGGAC   1573

BSNT_04449___   1574 CTCTCGTATAA   1584
                     |.|||||.|||
BL00839___pck   1574 CGCTCGTTTAA   1584


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