Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01032 and BL00843

See Amino acid alignment / Visit BSNT_01032 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:33
# Commandline: needle
#    -asequence dna-align/BSNT_01032___ydiC.1.5803.seq
#    -bsequence dna-align/BL00843___ydiC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01032___ydiC-BL00843___ydiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01032___ydiC-BL00843___ydiC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01032___ydiC
# 2: BL00843___ydiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 746
# Identity:     466/746 (62.5%)
# Similarity:   466/746 (62.5%)
# Gaps:         112/746 (15.0%)
# Score: 1336.0
# 
#
#=======================================

BSNT_01032___      1 ATGACAATATTAGCAATTGATACATCAAATTATACATTGGGCATTGCGCT     50
                     |||||.|||.|.||.|||||||||||.||||..||               
BL00843___ydi      1 ATGACGATACTTGCGATTGATACATCCAATTTAAC---------------     35

BSNT_01032___     51 GCTTCGAG------------AAGAC---ACTGTTATAGC--AGAATACAT     83
                     |||..|||            |||||   |..||.|||||  ||.|||.||
BL00843___ydi     36 GCTCGGAGTGGCATTAATCAAAGACGGAAAAGTGATAGCCGAGCATATAT     85

BSNT_01032___     84 TACATATTTGAAAAAGAACCACTCTGTAAGAGCGATGCCTGCTGTTCATT    133
                       |..|.||.||.||.|||||.||.||.|||||.|||||.|     ||.|
BL00843___ydi     86 --CCCACTTAAAGAAAAACCATTCGGTCAGAGCCATGCCGG-----CAAT    128

BSNT_01032___    134 C-----ATTGCTGAATGATTGTGATATGGCACCGC--AG-GACCTTTCTA    175
                     |     |.|.||.||.||.||.|.|.|   |..||  || |||||..|..
BL00843___ydi    129 CGACGAACTCCTTAAAGAGTGCGGTTT---AAAGCCTAGTGACCTGACCC    175

BSNT_01032___    176 AAATTGTCGTTGCAAAAGGCCCAGGTTCATACACAGGAGTAAGAATAGGT    225
                     ||||||..|||||.||||||||.||||||||.|||||.||..|.||.||.
BL00843___ydi    176 AAATTGCAGTTGCCAAAGGCCCGGGTTCATATACAGGCGTGCGGATCGGC    225

BSNT_01032___    226 GTGACGTTGGCCAAAACACTTGCCTGGTCTTTAGACATTCC----AATAA    271
                     ||||||.|.||||||||.|||||.|||||.|||.|.|||||    ||.| 
BL00843___ydi    226 GTGACGATTGCCAAAACGCTTGCATGGTCATTAAATATTCCGGTTAAAA-    274

BSNT_01032___    272 GTGCTGTATCAAGTCTTGAGACGCTTGCGGCAAATGGCCGGCATTTTGAC    321
                        |.||.|||||.|||||...||||||||||||.|||||...|||..|.
BL00843___ydi    275 ---CCGTTTCAAGCCTTGAAGTGCTTGCGGCAAACGGCCGTTTTTTCCAA    321

BSNT_01032___    322 GGTCTGATCAGCCCAATCTTTGATGCTAGACGGGGACAGGTGTACACAGG    371
                     ||..||||..|.||..|.|||||||||||.||.||.|||||.||.||.||
BL00843___ydi    322 GGCTTGATTTGTCCGTTGTTTGATGCTAGGCGCGGTCAGGTTTATACGGG    371

BSNT_01032___    372 TCTGTATCAATATA--------AAA----ATGGGCTTTTAGAGCAAGTTG    409
                     .|||||.||.||||        |||    ||||..|...||||.|     
BL00843___ydi    372 ACTGTACCAGTATAGGGACGGCAAACTCCATGGATTGGAAGAGGA-----    416

BSNT_01032___    410 TTCCAGATCAAAATGTGATGCTGGCAGATTGGCTGGAGATGCTAAAAGAA    459
                       |||||.||     |..||||.|.|||||||||..|.|.|||.||||..
BL00843___ydi    417 --CCAGAACA-----TTCTGCTTGAAGATTGGCTAAAAAAGCTGAAAGCC    459

BSNT_01032___    460 AAGGGGC-----GTCCTGTTTTGTTTT--TAGGTCACGACACTTCTATTC    502
                     |.||..|     ||||       ||||  ||||...||||||....||||
BL00843___ydi    460 ATGGATCAGCAAGTCC-------TTTTCATAGGAAGCGACACCGGGATTC    502

BSNT_01032___    503 ACAAGCAGATGAT--AAAGGATGTTCTTAGAACAAAAGGATTCATTG--G    548
                     |||.|.|.|||||  ||.||||..||...||||||..||  |.||||  |
BL00843___ydi    503 ACAGGGAAATGATCGAACGGATTCTCGATGAACAAGCGG--TTATTGCAG    550

BSNT_01032___    549 AACTGCTGCCCAGCATAACCCGCGTCCTTCAGAATTGGCTTTTCTCGG-G    597
                     |.|  ||||||.|||....||..|.|||||||||||||||||..|||| |
BL00843___ydi    551 ACC--CTGCCCTGCAGCTTCCAAGACCTTCAGAATTGGCTTTAATCGGAG    598

BSNT_01032___    598 AA--GGAAAAGGAAGCAGCTGATGTTCATGGGC-TTGTCCCGGATTACTT    644
                     ||  ..||.||||.| |||...||..||   || ||||.||..|.||..|
BL00843___ydi    599 AACTTAAAGAGGACG-AGCCAGTGCACA---GCATTGTTCCAAACTATAT    644

BSNT_01032___    645 GCGGCTGGCAGAAGCTGAAGCGAAATGGATTGAAAGTCAAAAGTAG    690
                     .||.|||||.|||||.||.||....|||.||||||..||||||||.
BL00843___ydi    645 TCGTCTGGCCGAAGCCGAGGCCGTCTGGCTTGAAAAACAAAAGTAA    690


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