Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03022 and BL00893

See Amino acid alignment / Visit BSNT_03022 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:43
# Commandline: needle
#    -asequence dna-align/BSNT_03022___ynzE.1.5803.seq
#    -bsequence dna-align/BL00893___ynzE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03022___ynzE-BL00893___ynzE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03022___ynzE-BL00893___ynzE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03022___ynzE
# 2: BL00893___ynzE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 439
# Identity:     216/439 (49.2%)
# Similarity:   216/439 (49.2%)
# Gaps:         161/439 (36.7%)
# Score: 579.5
# 
#
#=======================================

BSNT_03022___      0 --------------------------------------------------      0
                                                                       
BL00893___ynz      1 ATGGGTAAGTTGACTGAAAAGCTGGGTTTGGCTCTTGTTTTTTCAATCGT     50

BSNT_03022___      1 -----------------------------------------------TTG      3
                                                                    ||.
BL00893___ynz     51 TGTCTGGCTTGGCGCCACCGTATTTTTTATGCTGTTCGGCAGTGCGGTTC    100

BSNT_03022___      4 TTGACTG-ATCCGGCTGAAGAAGCCTTTTTG--CCGAACTTTCTTC-TCT     49
                     || ||.| |.||||| .||||.|..|||.||  |||  ||||.|.| |||
BL00893___ynz    101 TT-ACAGAACCCGGC-CAAGATGGTTTTATGCTCCG--CTTTTTGCTTCT    146

BSNT_03022___     50 TGGGAG-CGGACAC---CGCTCTTGTTTTATGCCTTG-TGTTC-TTTCTC     93
                     | |.|| |||| ||   .||.||| ||.||||||.|| ||.|| |||.||
BL00893___ynz    147 T-GAAGCCGGA-ACTTTTGCCCTT-TTATATGCCGTGATGCTCGTTTATC    193

BSNT_03022___     94 -------TATCAAAAACTCGATCAATCACAGTTCGCGGTGATAAAGCTAG    136
                            |..|||||   |||        .|||.||||.|.|.|||||.|
BL00893___ynz    194 GGCGGGTTGACAAAA---CGA--------GGTTTGCGGCGGTTAAGCTTG    232

BSNT_03022___    137 GTATATG-GGGATCAGCGGTCGGTTTATTGATTGATACGATTTCCCTT--    183
                     |.|| || |||.||.||.||||||||.||..|.|  |||.|||..|||  
BL00893___ynz    233 GCAT-TGTGGGGTCGGCTGTCGGTTTGTTTCTCG--ACGCTTTTTCTTTA    279

BSNT_03022___    184 TGGAATCATCCCCTCATCCTCCCGGCTTTATCAAAGGGCCAAGTTATTGC    233
                     |||||||||.|.||.|||.|||||||..|.|||.|.|||||..|.||||.
BL00893___ynz    280 TGGAATCATTCGCTGATCTTCCCGGCGCTTTCAGATGGCCAGATGATTGG    329

BSNT_03022___    234 GTTTGCGATATGGATGGTATGCGCCTACTG-CATGTATTTGCTCATTCCG    282
                     |||||||.|.||||||||.|.|||.|| || ||||||||||...||.|||
BL00893___ynz    330 GTTTGCGGTTTGGATGGTCTTCGCGTA-TGCCATGTATTTGACGATACCG    378

BSNT_03022___    283 CTGAAATTATCACATAAAAAATGA---------------    306
                     |     |.||| |.|.|||||.||               
BL00893___ynz    379 C-----TCATC-CTTGAAAAAAGAAGGTCTGCAGTTTAA    411


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