Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03102 and BL00894

See Amino acid alignment / Visit BSNT_03102 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:46
# Commandline: needle
#    -asequence dna-align/BSNT_03102___csaA.1.5803.seq
#    -bsequence dna-align/BL00894___csaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03102___csaA-BL00894___csaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03102___csaA-BL00894___csaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03102___csaA
# 2: BL00894___csaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 350
# Identity:     236/350 (67.4%)
# Similarity:   236/350 (67.4%)
# Gaps:          34/350 ( 9.7%)
# Score: 748.0
# 
#
#=======================================

BSNT_03102___      1 ATGGCAGTTATTGAAGACTTTGAGAAATTGGATATCAGAACG----GGAA     46
                     ||||||...||.|||||.|||...||..|.|||||    .||    ||||
BL00894___csa      1 ATGGCAACAATCGAAGATTTTTTAAAGCTTGATAT----TCGGGTTGGAA     46

BSNT_03102___     47 CAATTGTAAAAGCGGAAGAATTTCCTGAAGCAAGGGTACCGGCTATCAAG     96
                     ||.||.|||||||.|||||.|||||.|||||.|.|||||||||.||.|||
BL00894___csa     47 CAGTTTTAAAAGCAGAAGAGTTTCCGGAAGCGAAGGTACCGGCCATTAAG     96

BSNT_03102___     97 CTTGTGATAGATTTTG--GGACTGAAATCGGCATAAAACAA----TCGAG    140
                     ||||..||.|||||||  |||  ||.||.|||.|    |||    |||||
BL00894___csa     97 CTTGAAATCGATTTTGGCGGA--GAGATTGGCGT----CAAGTGTTCGAG    140

BSNT_03102___    141 CGCACAAATCACGAAGCGTTACAAGCCGGAAGGTCTCATCAACAAGCAAG    190
                     |||.||||||||.||||||||.|.|||.|||...||..|...|..|||.|
BL00894___csa    141 CGCTCAAATCACAAAGCGTTATACGCCTGAAAAGCTTGTAGGCCGGCAGG    190

BSNT_03102___    191 TCATAGCAGTCGTGAACTTTCCGCCCCGCCGAATCGCCGGATTTAAATCG    240
                     |.|..||||||||.||.||||||||.||.||.||.|||||.|||||||||
BL00894___csa    191 TGACGGCAGTCGTCAATTTTCCGCCGCGGCGGATTGCCGGGTTTAAATCG    240

BSNT_03102___    241 GAAGTCTTGGTCCTCGGCGGCATACCCGGCCAGGGCGACGTCGTCCTTTT    290
                     |||||..|.||.||.||.|||.||||.|...|.|||||   .||..|.||
BL00894___csa    241 GAAGTTCTCGTTCTTGGAGGCGTACCGGAAAAAGGCGA---TGTTATATT    287

BSNT_03102___    291 GCAG---CCGGATC----AGCCTGTCCCAAACGGCACAAAAATCGGATAA    333
                     ||.|   ||.||||    |||    .||.||.||.||.||.|||.|.|.|
BL00894___csa    288 GCTGGCCCCTGATCAAGAAGC----GCCCAATGGAACGAAGATCAGCTGA    333


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