Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02939 and BL00896

See Amino acid alignment / Visit BSNT_02939 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:37
# Commandline: needle
#    -asequence dna-align/BSNT_02939.1.5803.seq
#    -bsequence dna-align/BL00896.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02939-BL00896.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02939-BL00896.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02939
# 2: BL00896
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1596
# Identity:     660/1596 (41.4%)
# Similarity:   660/1596 (41.4%)
# Gaps:         714/1596 (44.7%)
# Score: 2186.0
# 
#
#=======================================

BSNT_02939         0 --------------------------------------------------      0
                                                                       
BL00896            1 ATGAGATGGTGGAAAGCAAAAACGCGAAGAATGATACAGTCGTCCAACAA     50

BSNT_02939         0 --------------------------------------------------      0
                                                                       
BL00896           51 GCCGGATAAACCTAAAAATGAAGTGCCGTCTGTGGAGTCAACTGGGTATT    100

BSNT_02939         0 --------------------------------------------------      0
                                                                       
BL00896          101 TTACCGGCGATTTTGATCACGACTTGAAACTGGCCAAAACGGCTATGGAG    150

BSNT_02939         0 --------------------------------------------------      0
                                                                       
BL00896          151 AATAACTCAGACGTTCATTTCCGCGAATTCAACTTAGGGCGCACCGGCAT    200

BSNT_02939         0 --------------------------------------------------      0
                                                                       
BL00896          201 CCGCGCGGCGATTGTATTTGTCGAAATGCTTGCGGATCAAGACCTGATTG    250

BSNT_02939         0 --------------------------------------------------      0
                                                                       
BL00896          251 ACAAGCATATTATGAAATCCCTTATGGATGATTTTTCCAAAGAATATAAA    300

BSNT_02939         0 --------------------------------------------------      0
                                                                       
BL00896          301 GTTGAACTTTCTTCATTAAGCAGCAATGTGACCGACTTAATTAAAAAGCA    350

BSNT_02939         0 --------------------------------------------------      0
                                                                       
BL00896          351 AATTTTATCAATTAGCGGCGTATCAGAGGTAAACCATGTCAACGAAGTGG    400

BSNT_02939         1 -------------AT-GGGTTCGACAGCGCTTCTCATCGATGGAATACCG     36
                                  || .|||.||.|...|||.||.|||||.||  |.|.|
BL00896          401 TGCCCGAAGTGTTATCCGGTGCGGCCATGCTGCTGATCGACGG--TTCAG    448

BSNT_02939        37 CAGGCGTTT--CTTCTGGGAACTGTAAAAAAACAAAATCGAAGTATCA--     82
                     |.|..||||  ||.|||||||||||.||||   .||||..|||.|.||  
BL00896          449 CGGAAGTTTTACTGCTGGGAACTGTTAAAA---GAAATACAAGGAACATT    495

BSNT_02939        83 -AGGAGCCGCTTTCAGAAGCGCTTGTCAGAGGACCGCGCACAGGCTTTAC    131
                      |.|||||..|.||||||.|..|.||.|||||..|||||...||||||||
BL00896          496 GAAGAGCCCGTATCAGAATCTTTGGTAAGAGGCGCGCGCGTCGGCTTTAC    545

BSNT_02939       132 AGAAGAGTTGAGTACGAATACAGCTCTTTTGAGACAGCAAGGAAAAAATG    181
                     ||||..|.|..|.||.||||||||.||||||||.|||||.||.||||   
BL00896          546 AGAAACGATCGGCACCAATACAGCCCTTTTGAGGCAGCACGGCAAAA---    592

BSNT_02939       182 ATCAATTAACATTG---------CAGAGATTTGAAGTAGGAACACGA---    219
                     |||||  ||| |||         ||   ||||.||||.||.|..|||   
BL00896          593 ATCAA--AAC-TTGTCTATGGTTCA---ATTTCAAGTTGGGAAGCGAGCC    636

BSNT_02939       220 -TTAAAAAAGGATTTAATTATCGCTTATATGAATGACATTGCAGACCCAA    268
                      |.||||    ||.|..|..||||||||||.||.||||||||.||.|||.
BL00896          637 GTCAAAA----ATCTTGTCGTCGCTTATATCAAAGACATTGCGGAACCAG    682

BSNT_02939       269 AAGTAGTCGAGGAAGTAAGAAAAAGAGT-GAGAGGGATTGAGATCGATCA    317
                     ...|.||.||.|||||.|.|||||||.| || |..||||||.||.|||.|
BL00896          683 GGCTGGTGGAAGAAGTCAAAAAAAGAATCGA-AAAGATTGATATAGATGA    731

BSNT_02939       318 TTTGCCGGAGTCAGGCTACGTTGAACAGTTAATTGAGGATAATTATTTGA    367
                     |.|.|..||.|||||.|..||.||||||.|.||.||.||.||||||.|.|
BL00896          732 TGTCCTTGAATCAGGTTTTGTCGAACAGCTGATCGAAGACAATTATCTCA    781

BSNT_02939       368 GCCCGTTCCCGCAAGTACAGAGTACAGAACGTCCTGATCGCGTCATAAGC    417
                     |.||.||.|||||.||.||.||.||.|||||||.|||..|.||.||.||.
BL00896          782 GTCCATTTCCGCAGGTGCAAAGCACTGAACGTCTTGACAGGGTAATGAGT    831

BSNT_02939       418 GAATTAATGGAAGGAAGAGTAGCTATTCTGCTAGACGGCACTCCGTTTGC    467
                     |..||||||||.||||||||.||.|||.|..|.|||||.||.||.||||.
BL00896          832 GCGTTAATGGAGGGAAGAGTGGCCATTTTATTGGACGGAACGCCTTTTGT    881

BSNT_02939       468 TTTGATTGTTCCAGTCACTTTCAGCATGATGCTTCAATCGCCTGAAGATT    517
                     |||.||.|||||.||.||.|||||||||.|.||.||||||||.||.||||
BL00896          882 TTTAATCGTTCCGGTTACATTCAGCATGCTCCTCCAATCGCCCGAGGATT    931

BSNT_02939       518 ATTATGAACGGTGGTTCCCGAGCTCGCTCATCAGATTGCTGAGGTTCATC    567
                     ||||||||||.|||.|.|||||.||.||.|||.|..|..||.|..||..|
BL00896          932 ATTATGAACGCTGGCTGCCGAGTTCCCTGATCCGCATCATGCGAATCGGC    981

BSNT_02939       568 GCAGCAATGATAACATTATTCGC-------ACCCGCTTTATATATATCAT    610
                     |||||.|||||       .||||       .||.|||.|||||||.||.|
BL00896          982 GCAGCCATGAT-------CTCGCTGCTTGGGCCGGCTCTATATATTTCCT   1024

BSNT_02939       611 TTATTTCTTTTCATCCGGGGTTAATTCCGACCAAGCTGGCAATTTCAATT    660
                     |||||||.||||||||.|||.|.|||||||...|.||.||.|||||.|||
BL00896         1025 TTATTTCGTTTCATCCCGGGCTGATTCCGAGTGAACTTGCGATTTCCATT   1074

BSNT_02939       661 TCCGGGACGCGCCAAGGTGTTCCGTTCCCATCCCTCATTGAAGC-CTTAT    709
                     .||||.|||.|...||||||.||.||.|||||.||.|||||||| ||.| 
BL00896         1075 ACCGGAACGAGGGTAGGTGTGCCTTTTCCATCGCTGATTGAAGCGCTCA-   1123

BSNT_02939       710 TTATGGAAGTCGCGATCGAAATTTTAAGAGAAGCGGGGCTTCGTCTGCCA    759
                     ||||||||||.||.||.||||||||..|.||.||.||.||.||.||.|||
BL00896         1124 TTATGGAAGTGGCAATTGAAATTTTGCGCGAGGCCGGCCTGCGGCTTCCA   1173

BSNT_02939       760 AAACCGATTGGACCCGCAATTGGCATAGTTGGCGGATTAATCATC-GGGA    808
                     |||||.||.||.|||||.||.||.||.||.|||||..|.|||||| ||||
BL00896         1174 AAACCAATCGGTCCCGCGATGGGAATCGTCGGCGGTATCATCATCGGGGA   1223

BSNT_02939       809 AGCAGCTGTGCAGGCGGGGATTGTCAGTCCAATCATGGTCATTGTTGTTG    858
                     .||.||.||||||||.||.||.|||||.||.||.||||||||.||.||||
BL00896         1224 GGCTGCCGTGCAGGCAGGCATCGTCAGCCCGATTATGGTCATCGTCGTTG   1273

BSNT_02939       859 CGCTCACAGCAATTTCTTCATTTGCCATCCCGCATTATAGCACAGGTAT-    907
                     |..||||.||.||||||||||||||.||.||.||.||.|||.|.||.|| 
BL00896         1274 CCGTCACCGCGATTTCTTCATTTGCGATTCCTCAATACAGCGCCGGCATT   1323

BSNT_02939       908 ---------------AG---------------------------------    909
                                    ||                                 
BL00896         1324 TCGCTGCGCATGCTGAGATTTGTAGCGATGTTTTGTGCAGCCACGTTCGG   1373

BSNT_02939       909 --------------------------------------------------    909
                                                                       
BL00896         1374 TTTGTACGGGGTGATTATGTTTTTCCTCATGCTTGCCAGCCACGCGGTGA   1423

BSNT_02939       909 --------------------------------------------------    909
                                                                       
BL00896         1424 AGCTGAAAAGCTTTGGCGTTCCTTATGCGAGCCCTGCCGTTCCTTATCGT   1473

BSNT_02939       909 --------------------------------------------------    909
                                                                       
BL00896         1474 TTGCGCGATTGGAAAGACTTCATCGTTCGCATGCCGATACAGATGATGAA   1523

BSNT_02939       909 ----------------------------------------------    909
                                                                   
BL00896         1524 AAAACGGCCGAAGCTGTTAAAAACAGACGATTCGACACGCCAGTAG   1569


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