Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06274 and BL00907
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:14
# Commandline: needle
# -asequence dna-align/BSNT_06274___yyaE.1.5803.seq
# -bsequence dna-align/BL00907___yoaE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06274___yyaE-BL00907___yoaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06274___yyaE-BL00907___yoaE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06274___yyaE
# 2: BL00907___yoaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2513
# Identity: 1188/2513 (47.3%)
# Similarity: 1188/2513 (47.3%)
# Gaps: 982/2513 (39.1%)
# Score: 2082.0
#
#
#=======================================
BSNT_06274___ 1 AT-GAG-CA-AAGTGCATC----AGTCGGCATGTCCGCTGAAT-----TG 38
|| ||| || |.||..||| ||.|||.||.|.| .||| ||
BL00907___yoa 1 ATGGAGTCATATGTTGATCAAAAAGACGGGATTTTC---AAATCCGTATG 47
BSNT_06274___ 39 TTGG---GACAGC---------TGCGGCTTTTTGGTGACT-GTTGAT--- 72
||.| |||.|| ||||| |.|| || |||.||
BL00907___yoa 48 TTCGCTCGACTGCCCGGATCAATGCGG------GCTG-CTCGTTCATAAA 90
BSNT_06274___ 73 ---GATGGAAA----GGTAACA-AAAGTGGACGGAGATCCAAACCATCCG 114
||.||||| |.|||.| |.|| ||.||.||..||||||||
BL00907___yoa 91 AAAGACGGAAAAATCGTTAAAATACAG-----GGCGACCCGGACCATCCG 135
BSNT_06274___ 115 ATTACGGAAGGTAAAATCTGC------GGCCGCGGCAGAATGCTTGAGAC 158
.|.||..|.||.||.||.||| |.||||
BL00907___yoa 136 GTCACACAGGGCAATATTTGCAATAAAGTCCGC----------------- 168
BSNT_06274___ 159 AAAAACAAATTCGCCTGATCGGCTTCGCTAT----CCAA-----TGAAA- 198
|||..|.|.||.||..|| ||| |||| |||||
BL00907___yoa 169 -------AATATGACGGAGCGTATT---TATGACCCCAAACGGCTGAAAA 208
BSNT_06274___ 199 --------AAA----------CAAAATGGCGAGTTTGTGCGGATTTCTTG 230
||| |||||
BL00907___yoa 209 CCCCGCTGAAACGGACGGGTCCAAAA------------------------ 234
BSNT_06274___ 231 GGAGCAGGCACTTGATGAAATTG--CCGATAAACTTCGGGAAATCAAG-- 276
|||||.|| |||| .||| |||||.|.|| ||| ||.|||
BL00907___yoa 235 GGAGCCGG-----GATG--TTTGAACCGATCAGCT--GGG--ATGAAGCG 273
BSNT_06274___ 277 ---GAAACG--TCGGAGACGACT-GCTGT-----TTTGCACAG------C 309
|||||| |||.|..|| || ||.|| .|||.|||| |
BL00907___yoa 274 ATTGAAACGATTCGCACCCG-CTGGCAGTCGCTCATTGAACAGGAAGGCC 322
BSNT_06274___ 310 CATGATTATGCGAATAACGGTCTGTTAAAAGCGCTTGATCAGCGTTTTTT 359
| |||| |.|..||| ||.|| .|||| ||
BL00907___yoa 323 C---------CGAA-AGCATTCT-------GCCCT---ACAGC-----TT 347
BSNT_06274___ 360 TAATGG--ATATGGCGGCGTGACCGAAA----TCGTCGGAAGCATATG-- 401
|.|.|| |||||| |||| .||.|.||||.| |||
BL00907___yoa 348 TTACGGAAATATGG----------GAAACTTGACGGCTGAAGGA-ATGGA 386
BSNT_06274___ 402 CTGGGGCT------------CCGGTATCGAGGCGCAAAGCT-------GG 432
|.||.||| .|||| ||.||.| |||| |.
BL00907___yoa 387 CAGGCGCTTTTTCCACCGCCTCGGT-TCCAGCC----AGCTTGACCGGGC 431
BSNT_06274___ 433 GATTT-------TGGCCGTTC-GT-------------ACGGT-------- 453
||||| ||.|.|||| || |||.|
BL00907___yoa 432 GATTTGCACCCCTGCCGGTTCTGTCGGCTATAAATACACGATGGGCGGAA 481
BSNT_06274___ 454 -CA-CGG-ACCG--CTTGATATTTACAACAG---CAAGCATG-TTGTTGT 494
|| ||| |||| |.||| |..||||||.| |||...|| ||.||.|
BL00907___yoa 482 GCATCGGCACCGATCCTGA-AGATACAACGGAGACAAAACTGTTTATTTT 530
BSNT_06274___ 495 GTGGGGAAGAAA---TGTATCCAGAACAAATATGCACTTATACCACCACT 541
.|||||||..|| .||.|| |||.||.||||| |.|.|.||||| |
BL00907___yoa 531 TTGGGGAATCAACGCGGTCTC---AACCAACATGCA-TCAAATCACCA-T 575
BSNT_06274___ 542 TGCAGCAGGTGAAAAAG--------AAGGGCGCCACAATTACG--GTGAT 581
||| |.|||||| ||.|||||.|.||| || ||.||
BL00907___yoa 576 TGC------TCAAAAAGCCCGGAAAAACGGCGCAAAAAT--CGTCGTAAT 617
BSNT_06274___ 582 TGATCCGATCTTC-----AATCCGACTGCCAAGCTTGCCGATCGCTATAT 626
||||.||| ||||.|||.|.|..|.|.|||||..|.|.|||
BL00907___yoa 618 -----CGATGTTCATAAAAATCAGACCGGCCGGATGGCCGACTGGTTTAT 662
BSNT_06274___ 627 CTCTG-TAAAGCCAGGAATGGACGGCTGGCTTGC----GGCAGCCGTTTT 671
||.| |....||.||.|..|||.||..|||||| |||| |..|
BL00907___yoa 663 -TCCGATTCGCCCCGGCACAGACAGCGCGCTTGCGCTTGGCA----TCAT 707
BSNT_06274___ 672 GAAAGTTCTGATTGAGACGGGAAGAACGGATGAAACGTTTATTT--CTGA 719
|.|.||| |.|||.| |.|||| |||| ||||
BL00907___yoa 708 GCATGTT-TTATTCA------AGGAAC-------------ATTTGGCTGA 737
BSNT_06274___ 720 GCACTCTGTCGGTTTTGATGATGTGAAAGAGCTTTTGAAGACCGTTTCTC 769
..|.|| .|||| |||||||..|| ||.| ||
BL00907___yoa 738 TGAATC-----ATTTT-------TGAAAGAATTT------ACAG----TC 765
BSNT_06274___ 770 TG----GAAGAGTTTATTGTG--------------AAAAC---------- 791
.| |||||| .||.| ||.||
BL00907___yoa 766 GGCCACGAAGAG----CTGCGCCGCCACGTGCGGCAATACGACCCCGCCG 811
BSNT_06274___ 792 ----AGAAACTTCTATGGAGG--ACCTGGAGTATCTGGCCGCTTTGTATG 835
||| ||.|| ||| ||.||||| ||| |.|||
BL00907___yoa 812 CAGTAGA---------GGCGGTCACC-GGCGTATC---CCG----GAATG 844
BSNT_06274___ 836 CT--------GATGGTCCG-GTGT---------------CTACTTTTATG 861
.| |.|.|.||| .||| ||.|.||.||.
BL00907___yoa 845 ATATTATCGAGCTTGCCCGCCTGTACGGCCGCACCTCCCCTTCATTGATT 894
BSNT_06274___ 862 GGGCTTGGCA------TGCAGCGTTATAAAAACGGCGGGGGAACGATTCG 905
.||.|.|||| |.||||.|.||.|.|| .||.||||.|| |||
BL00907___yoa 895 CGGATCGGCAACGGTCTTCAGCATCATGATAA---TGGAGGAATGA-TCG 940
BSNT_06274___ 906 TTGGATTGATGCA----CTCGT---TGC-----------GGCAAGCGGAA 937
|| .||| ||||| ||| |||.|..|||
BL00907___yoa 941 TT-------CGCACCATCTCGTGCCTGCCCGCGATCACGGGCCAATGGA- 982
BSNT_06274___ 938 ATGTCGGAATTAAGGGCGGCGGCGCGAATTTC---GGAAATGTCCA---G 981
||.|| ||.||.|||||.|||| || ||.|| || .
BL00907___yoa 983 ----CGAAA--AAAGGAGGCGGAGCGA---TCAAAGGCAA----CACGGC 1019
BSNT_06274___ 982 ATTGGTGAGAGCTT----TGCAAAAACAAAGCTGACGCTGCCGGA---AT 1024
|||..|| ||.| |.|||||.||..||.| ||| ||.|| ||
BL00907___yoa 1020 ATTTTTG---GCCTATAATACAAAAGCATTGCAG-CGC--CCCGATTTAT 1063
BSNT_06274___ 1025 TAAAA---ACAACATCCCGTTCTTTTTCAATGATGACACAG--------- 1062
||||| |.||| .|||....|..|||| .||||..|||
BL00907___yoa 1064 TAAAAGGCAGAAC--GCCGAGAGTCATCAA-CATGAATCAGCTCGGCAAA 1110
BSNT_06274___ 1063 GCT---GAAGAAGTGTTGACCG--CTGCTGATCC-TGCGAT-TGAGATGA 1105
||| ..|||| |||| |..|.||||| |.||.| |
BL00907___yoa 1111 GCTCTCTTAGAA------ACCGAACCACCGATCCGTTCGCTGT------- 1147
BSNT_06274___ 1106 TTATTGTG-ACGTGCGGAAATCCG-------------CTGACTCAGGTGC 1141
||||| || .||.|.|||||| |||| |.
BL00907___yoa 1148 ---TTGTGTAC-AGCAGCAATCCGGCCGTTGTCGCGCCTGA-------GG 1186
BSNT_06274___ 1142 CGAATACAAATAAGGTGAGACAAGCATTTGA----AAAGGTTCCCA-TGA 1186
||| ||||| ||.|||.|||.|.|||| .|||.|| .| |.|
BL00907___yoa 1187 CGA--ACAAA----GTCAGAAAAGGACTTGAGCGCGAAGATT--TATTCA 1228
BSNT_06274___ 1187 CGG----TCGCGATTGATTCCATTATGACGGATAC---------CGCAGA 1223
||| ||.||||..|| ||.|||||||.|| |||.||
BL00907___yoa 1229 CGGTTGTTCACGATCTAT----TTCTGACGGAAACGGCACGGTACGCCGA 1274
BSNT_06274___ 1224 GCTGTGTGATTAT-GTTTTGCCGACTGCCACTGTTTTTGAAGAAGA-AGA 1271
||| ||..|||||.||.|..|.|.|||.||| ||.| .||
BL00907___yoa 1275 ----------TATCGTCCTGCCGGCTTCTTCCGCTTTCGAA-AATACGGA 1313
BSNT_06274___ 1272 TATCTACTATTCCAGTATGTATCATCATTATGTTCAG-TACGGGAAGAAG 1320
|.|||| ||...|| ||| |..||.|||||||..||| |.| |||||
BL00907___yoa 1314 TTTCTA-TACATCA-TAT-TGGCACCATTATGCGCAGATTC----AGAAG 1356
BSNT_06274___ 1321 CTTGTG---GAG-----CCGC-AGGGTGAAGCGAAATCGGACAGCTGGAT 1361
|.|||| ||| |.|| ||.| .|||..|||| ||||..|.||
BL00907___yoa 1357 CCTGTGATTGAGAAATACGGCGAGAG-CAAGTCAAAT---ACAGAAGTAT 1402
BSNT_06274___ 1362 CTGGTCAGAGCTTGCAAAACGTCTTGGGTTTGGCGAGCTG---TTTGA-- 1406
|||| |||| ||||.|..||||| || |||||
BL00907___yoa 1403 ----TCAG-GCTT----------TTGGCTGAGGCGA--TGGGCTTTGATG 1435
BSNT_06274___ 1407 ATACAGCACTC---AAGAATTTTT-------AGAGAT---------GGGG 1437
|| .||| |.| |||| || |||||| ||.|
BL00907___yoa 1436 AT-GAGC-CGCTGAAAGA----TTCCGACGAAGAGATGATCAGACAGGCG 1479
BSNT_06274___ 1438 CTT-----TCCTCATTGGAAGCAGAG----GATG----------TGACA- 1467
||| .|||.|| ||.|.|.| |||| |||||
BL00907___yoa 1480 CTTGACTACCCTGAT---AATCCGTGGCTCGATGGCATTGACTATGACAG 1526
BSNT_06274___ 1468 CTTG-------AGCGTT---TAAAAG--------AAAAAGGCCACCTCCC 1499
|.|| |||.|| |.|||| ||||.|| .
BL00907___yoa 1527 CCTGACTGAAAAGCATTTTGTCAAAGCAAATCGAAAAACGG--------T 1568
BSNT_06274___ 1500 TCTTCCAGTAAAACAGGTGCCGTGGGATGATTATCAGTTTTTGACGCCGA 1549
|.||||.|..|||| |||| ||||||.|
BL00907___yoa 1569 TTTTCCTGATAAAC---TGCC---------------------GACGCCTA 1594
BSNT_06274___ 1550 GTGGAAAATTTGAATT-TACTTCGTCGCTAGCTGAGCAAAAAGGATTTAG 1598
|.||||||.||||||| ||.| ||||||.|||..||
BL00907___yoa 1595 GCGGAAAAATTGAATTGTATT---------------CAAAAATGATGGAG 1629
BSNT_06274___ 1599 CGGCTC-GCTTCAATTAAAT--GTGCCCGAAGAATCTGTTTTCCAT---- 1641
|.||.| ||| || |.|||.|..||.| |||
BL00907___yoa 1630 CAGCACGGCT--------ATCCGGGCCTGCCGACT--------CATACCC 1663
BSNT_06274___ 1642 -----AATGAGGAGTTAGCTGAAAAGTACCC----TTAT----------- 1671
|.||| |.|.||.|||||.|| ||||
BL00907___yoa 1664 CGCTCATTGA------AACGGACAAGTATCCATTTTTATTTGTGCCCGGC 1707
BSNT_06274___ 1672 -------ACGCTGTTATCCATTCATCCGCAGCGTTCCAACCATTCACAGC 1714
||..|.||.|..||||..|| ..|||.|||.||..|.|.|
BL00907___yoa 1708 CCGAATCACAATTTTTTAAATTCGACC----TTTTCAAACAATGAAAAAC 1753
BSNT_06274___ 1715 ATGTGCCGTTTATTGAAAAGCTTCAGCACGTTCAGGTCGATATTTCTC-C 1763
||.| |...||| |||||| .||| |||.|.|||.| .
BL00907___yoa 1754 ATAT-CAAATTA--GAAAAG---GAGC----------CGAAACTTCACTT 1787
BSNT_06274___ 1764 AGATAT---AGCTGCTGAGCAGAATCTTCAGG---------ATGGAGACG 1801
|.|||| ||.|||.|| |||| .||| |||||||..
BL00907___yoa 1788 AAATATAAAAGATGCCGA--AGAA----AAGGGCATCGAAAATGGAGATT 1831
BSNT_06274___ 1802 AGGTTGTCATCTTT--AATGACCGCGG--------------ACGCTTGAA 1835
.||| ..|..||| ||||||||||| .||||
BL00907___yoa 1832 TGGT--GAAAGTTTGGAATGACCGCGGCTCATGCATCCTGCCCGCT---- 1875
BSNT_06274___ 1836 GGGC--AAGGTGAAA--------------GTGATGAAGCAGGCTCATGCG 1869
|| ..||.|||| ||| ||.| ||| ||.
BL00907___yoa 1876 --GCCGTCGGAGAAAACGTCCTTCCGGGCGTG-----GCCG--TCA-GCC 1915
BSNT_06274___ 1870 AAGACGATTAATATAGATGAAGGCATGTGGGCGGCTTTTGGAGGG----- 1914
|.| ||| |||||||||.|...|.||||
BL00907___yoa 1916 AGG------------GAT-------TGTGGGCGGATGCAGAAGGGAAGCA 1946
BSNT_06274___ 1915 -----TCAGTCAATGCACTGACAAATGA-----TACAAATTCTGATAATG 1954
|| ||||||||.|||||....|| || .|||||
BL00907___yoa 1947 TTATCTC-GTCAATGCGCTGACGCCCGACCGTTTA-----GCTGAT---- 1986
BSNT_06274___ 1955 GAATGGGAAGT------ACGCTTTTTGACTGTTTAGTAGG-------CTT 1991
|||||..|| || ||| ||.||.||.|.| .||
BL00907___yoa 1987 --ATGGGCGGTGGTGCAAC----TTT--CTTTTCAGGAAGAGTTCAAATT 2028
BSNT_06274___ 1992 GAAAAAAGCATAA 2004
||||||| .||.|
BL00907___yoa 2029 GAAAAAA-TATGA 2040
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