Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05929 and BL00926
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:00
# Commandline: needle
# -asequence dna-align/BSNT_05929___cydD.1.5803.seq
# -bsequence dna-align/BL00926___cydD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05929___cydD-BL00926___cydD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05929___cydD-BL00926___cydD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05929___cydD
# 2: BL00926___cydD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1867
# Identity: 1208/1867 (64.7%)
# Similarity: 1208/1867 (64.7%)
# Gaps: 257/1867 (13.8%)
# Score: 3702.0
#
#
#=======================================
BSNT_05929___ 1 ATGAAGAAAGAAGA---ATGGATTTTGCCGTATATCAAGCAAAATGCCCG 47
|||||.||.||||| .||||||.||||.||.||||||.|||||.|..|
BL00926___cyd 1 ATGAACAATGAAGACGGGTGGATTCTGCCCTACATCAAGAAAAATACAAG 50
BSNT_05929___ 48 CCTGTTTGTTCTGGTTATCTTTTTG---GGCGGGGTGACGATTTTTTCTG 94
.|| ||||.|| .||.||.|..|| ||||||.|||||...|..||.|
BL00926___cyd 51 GCT-TTTGATC--ATTGTCGTGCTGCTTGGCGGGTTGACGGCATGCTCGG 97
BSNT_05929___ 95 CTGCTTTTCTCATGTTCACCTCAGGGTTTTTGATTTCTAAAGCGGCGACA 144
|.|||..|||||||||.|||||.||.|.|||.||.||.||||||||.||.
BL00926___cyd 98 CGGCTGCTCTCATGTTTACCTCCGGTTATTTAATATCCAAAGCGGCTACG 147
BSNT_05929___ 145 AGGCCGGAAAATATTCTGCTTATTTATGTGCCGATTGTCGCTGTGCGCAC 194
.|.|||||||||.||.||.|.||.|||||.|||||.||.||.||.|||||
BL00926___cyd 148 CGTCCGGAAAATGTTTTGATGATCTATGTTCCGATCGTAGCGGTTCGCAC 197
BSNT_05929___ 195 CTTTGGGATTGCGCGCTCTGTTTCGCGATATGTGGAACGGCTCGTC-GGG 243
|||.||||||..||||||.||.|||||.|||||.||.||| |.|.| |||
BL00926___cyd 198 CTTCGGGATTCTGCGCTCGGTGTCGCGCTATGTTGAGCGG-TTGACAGGG 246
BSNT_05929___ 244 CATCACATCATTTTGAAAATCGTATCCGACATGCGCGTCCGCCTTTACAA 293
||.||.||||||||||||||..|||||||.|||||||||.|.|||||||.
BL00926___cyd 247 CACCATATCATTTTGAAAATTTTATCCGATATGCGCGTCAGGCTTTACAG 296
BSNT_05929___ 294 TATGCTTGAGCCGGGTGCTTT--GATGCTGCGTTCCCGTTTTCGCACGGG 341
.|||||.||.||....||||| .||| ||||...|||||.||.|||||
BL00926___cyd 297 GATGCTCGAACCTCAAGCTTTAAAATG--GCGTGAACGTTTCCGAACGGG 344
BSNT_05929___ 342 GGATATGCTCGGCATTTTGTCTGAGGATATTGAGCATTTGCAGG--ATGC 389
|||||||||||||||||||.|.||.|||.||||.|||||||||| |||
BL00926___cyd 345 GGATATGCTCGGCATTTTGGCCGACGATGTTGAACATTTGCAGGACATG- 393
BSNT_05929___ 390 TTTCTTAAAAACGATTTTTCCTGCGATCTCAGC-CTTGTTCCTGTATGCT 438
|..||.|.||||.|.|||||.|.|.|.||.|| |||.|| .|.||||..
BL00926___cyd 394 -TATTTGAGAACGGTATTTCCCGGGCTGTCGGCTCTTCTT-TTATATGGC 441
BSNT_05929___ 439 GTGTCAGTGAT---AGCGCTTGGCTTCTTCTCTTGGCCGTTTGC----CA 481
|| |.|.|| |||..|.|||||.||.||.|||||.||||| |
BL00926___cyd 442 GT---ATTCATCGCAGCTATCGGCTTTTTTTCATGGCCTTTTGCTGGAC- 487
BSNT_05929___ 482 TATTGCTTGCGCTTTAT-------TTGTTTGTTCTTGTTGTATTGTTTCC 524
||.|| |||.|.||| || ||.||..||.||| ||||
BL00926___cyd 488 TAATG---GCGGTCTATGCCGCGGTT-TTCGTATTTCTTG------TTCC 527
BSNT_05929___ 525 GGTTGTGTCTTTGCTCGTGACGAGAGCGAAGAATGCGAAGCTGAAAAGCG 574
|.||||.||..||||.|||||.||.||.||.||||....|||||||||.|
BL00926___cyd 528 GCTTGTTTCCCTGCTTGTGACAAGGGCAAAAAATGTTGCGCTGAAAAGAG 577
BSNT_05929___ 575 GGCGGAATGTGC----TGTACAGCCGTCTGACAGATGCTGTGATGGGTGT 620
|.|||| || |||||.|.|..||||||||.||.||.|||||.||
BL00926___cyd 578 GACGGA----GCCACTTGTACCGTCAGCTGACAGACGCGGTCATGGGGGT 623
BSNT_05929___ 621 CAGCGACTGGATGTTCAGCGGACGCCGGC---ATGCTTTTATTGATGCTT 667
.|||||.|||.|.||||||| |||||| |.|..|||.|..||.|.|
BL00926___cyd 624 GAGCGATTGGGTTTTCAGCG---GCCGGCAAAACGACTTTGTCCATTCGT 670
BSNT_05929___ 668 ATGAAAAAGAGGAACATGATTGGTTTGAGCTTGAACGGAAAAAACA---A 714
|||||...|..||||||||.|||.|.|.|.|.||| ||.||||| .
BL00926___cyd 671 ATGAAGCGGCAGAACATGAATGGCTGGCGATCGAA---AAGAAACAGGTG 717
BSNT_05929___ 715 CGCTTTACAAGATGGCGGGATTTTGCTGCGCAATGCCTTGTCGCCGGCCT 764
|||||.|...|.|||.||||.|||||...|||||||||.|..||.||.||
BL00926___cyd 718 CGCTTCAGTCGTTGGAGGGACTTTGCCATGCAATGCCTGGCGGCAGGACT 767
BSNT_05929___ 765 TATTTTGCTGATGCTGTTTTGGACGGCGGGACAGCAA--GCGGACGGCGA 812
|.||.|.||||||||..|.|||.|||..||.|| || |||||.||.|.
BL00926___cyd 768 TGTTCTTCTGATGCTAATATGGGCGGGCGGCCA--AAGCGCGGAAGGGGC 815
BSNT_05929___ 813 GCTCGCTAAAAC----GATGATTGCCGCTTTTGTGCTAGTGGTGTTTCCG 858
.||.||| | |.|.|||||.||.|||||.||.||.||||||||.
BL00926___cyd 816 TCTGGCT----CCTGTGTTTATTGCGGCGTTTGTCCTTGTTGTGTTTCCT 861
BSNT_05929___ 859 TTGACGGAAGCCTTTTTGCCGCTTTCGGATGC-----CTTAGGCGAAGTG 903
|||||||||||.||.||.|||||||||||.|| ||| .|.|.
BL00926___cyd 862 TTGACGGAAGCTTTCTTTCCGCTTTCGGACGCAGCGGCTT-----CAATC 906
BSNT_05929___ 904 CCGGGCTATCAGGATTCTATCAG-ACGCATGAACAAGGTGGCTCCTCAGC 952
||.|..|||||||||||| |.|| |.|.|||.|| ||| |
BL00926___cyd 907 CCTGAGTATCAGGATTCT-TTAGAAAGAATGGAC--GGT----------C 943
BSNT_05929___ 953 TGGAGGCGTCACAAACTGAATCAGGGGATCAAATGCTCGATCTTC----- 997
||.||.|| |.|||...||||| |...|..||||.|||
BL00926___cyd 944 TGCAGCCG-------CCGAAAAGGGGGA--ACGGGGCCGATGTTCAGCAG 984
BSNT_05929___ 998 -------------------------AAGATGTCAC-CTTGGCCTTTCGTG 1021
|.|||||||| |||.| ||||...|
BL00926___cyd 985 GAACGGGCGGAGGCTGTAGGTTTGGACGATGTCACGCTTCG-CTTTGAAG 1033
BSNT_05929___ 1022 ATGTGACGTTTTCTTATGA-CAACAGCAGCCAAGTGCTGCACAACTTTTC 1070
|.||..|.||||||||||| |||...||||| .|||.||.||....||||
BL00926___cyd 1034 ACGTTTCTTTTTCTTATGAGCAAGGCCAGCC-GGTGTTGGACGGTGTTTC 1082
BSNT_05929___ 1071 CTTTACGCTGCGCCAAGGAGAAAAAATGGCGCTGCTCGGCCGAAGCGGCT 1120
.||||...|....||.||.|||||.|..||..||||.||||..|||||..
BL00926___cyd 1083 ATTTATATTAAAGCAGGGTGAAAAGACCGCTTTGCTAGGCCCGAGCGGTG 1132
BSNT_05929___ 1121 CTGGGAAATC-AACATCGCTTG-CATTAATCGAAGGCGC-CTTGAAACCG 1167
|.||.||||| |.||| |||| |.||.||..||||.|| ||||
BL00926___cyd 1133 CGGGTAAATCGACCAT--CTTGTCGTTGATACAAGGGGCGCTTG------ 1174
BSNT_05929___ 1168 GACTCCGGTTCT---------GTGACGTTAAACGGA-------GTGGAGA 1201
|||| |||| .|.||.||.||| || |||.||
BL00926___cyd 1175 --CTCC--TTCTAAAGGAAACATTACATTGAAC-GATATTTCTGTGCAG- 1218
BSNT_05929___ 1202 CAGCGCTGTTAAAGGATCAGATTGCGGATGCG--GTGGCCGTGTTAAATC 1249
.||.||.|.||| .|.|||.| |.||| ||..||||.||.||||
BL00926___cyd 1219 ----TCTCTTCAGGGA-GAAATTTC--ACGCGTAGTCTCCGTTTTCAATC 1261
BSNT_05929___ 1250 AAAAACCGCACCTGTTTGATACAAGTATTTTGAACAACATCAGGCTCGGA 1299
|..|.|||||||||||||||||.|...|||||||.||.|||.|||||||.
BL00926___cyd 1262 AGCAGCCGCACCTGTTTGATACGACGGTTTTGAATAATATCCGGCTCGGG 1311
BSNT_05929___ 1300 AACGGAGAAGCAAGCGACGAGGA-------TGTGCGCCGCGCCGCAAAGC 1342
|||...||.||.|||||.||||| ||.|||.||||| |
BL00926___cyd 1312 AACCCTGACGCGAGCGATGAGGACGTGTATTGGGCGGCGCGC-------C 1354
BSNT_05929___ 1343 AGGTCAAGCTGCATGACTACATTGAGTCATTGCCTGATGGATATCATACC 1392
||||.|||||.||.||.||.|||.||||..|.||.||||||||||||||.
BL00926___cyd 1355 AGGTGAAGCTTCACGATTATATTCAGTCTCTTCCCGATGGATATCATACA 1404
BSNT_05929___ 1393 TCTGTACAAGAAACCGGCATCCGTTTTTCCGGTGGAGAGCGCCAGCGGAT 1442
||||||||.|||||.||||||||||||||.||||||||.|||||||||||
BL00926___cyd 1405 TCTGTACAGGAAACGGGCATCCGTTTTTCAGGTGGAGAACGCCAGCGGAT 1454
BSNT_05929___ 1443 CGCGCTTGCGAGGATTTTGCTGCAGGATACACCGATCATCATCCTCGATG 1492
.||..|.|||.|||||.||||||||||..||||.|||.||.|..|.||.|
BL00926___cyd 1455 TGCTTTGGCGCGGATTCTGCTGCAGGACGCACCCATCGTCGTGTTGGACG 1504
BSNT_05929___ 1493 AGCCAACAGTCGGCCTCGATCCTATTACCGAACGTGAATTGATGGA---- 1538
|.||.||.||.|||||.|||||||..||.|| ||.|||
BL00926___cyd 1505 AACCGACCGTAGGCCTTGATCCTAAAACAGA---------GAAGGAGCTT 1545
BSNT_05929___ 1539 -----AACGGTGTTTGAGGTGCTGAAAGGAAAAACGATTTTATGGATTAC 1583
||||.|||||.|.||.||..|.|||||.||..||.||||||||||
BL00926___cyd 1546 CTTTCAACGATGTTTCAAGTACTTGATGGAAAGACCGTTCTATGGATTAC 1595
BSNT_05929___ 1584 CCACCATCTCGCGGGAGTGGAAGCGGCTGATAAAATCGTATTTCTCGAAA 1633
.||||||.|.||.||||..||||||||.||....||..|.|||.|.||.|
BL00926___cyd 1596 ACACCATTTGGCAGGAGCCGAAGCGGCCGACCGGATTCTGTTTTTAGACA 1645
BSNT_05929___ 1634 ACGGCAAAACAGAAATGGAAGGAACCCATGAGGAGCTTCTGGCGGCAAAC 1683
|.||.||....|.|||||.|||.|.||||.||.|||||.| ||.||||
BL00926___cyd 1646 AAGGGAAGCTTGCAATGGCAGGGAGCCATCAGCAGCTTTT---GGAAAAC 1692
BSNT_05929___ 1684 GAACGGTACAGCCGC---------CTGTATCACCTTGATGTTCCTGTAAA 1724
.|.|.| ||| ||.||||..||.||||..|||||
BL00926___cyd 1693 AATCCG------CGCTATTCAAGACTTTATCGTCTGGATGCGCCTGT--- 1733
BSNT_05929___ 1725 ATAG------------- 1728
.||
BL00926___cyd 1734 -CAGCCGGCTTTTTTAG 1749
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