Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00264 and BL01012

See Amino acid alignment / Visit BSNT_00264 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:57
# Commandline: needle
#    -asequence dna-align/BSNT_00264___gerD.1.5803.seq
#    -bsequence dna-align/BL01012___gerD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00264___gerD-BL01012___gerD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00264___gerD-BL01012___gerD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00264___gerD
# 2: BL01012___gerD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 593
# Identity:     435/593 (73.4%)
# Similarity:   435/593 (73.4%)
# Gaps:          46/593 ( 7.8%)
# Score: 1577.0
# 
#
#=======================================

BSNT_00264___      1 ATG-TCAAAAGCCAAAACGCTATTGATGAGCTGTTTTTTGTTATTATCTG     49
                     ||| ||||.| ||..||.|||||.|||.|||||||||.||||..||||||
BL01012___ger      1 ATGTTCAAGA-CCGCAATGCTATCGATAAGCTGTTTTCTGTTTCTATCTG     49

BSNT_00264___     50 TAACAGCTTGCGCTCCAAAAGACCAAGCAGCGGATATGGACTATGATCAG     99
                     ||||||||||.|||||.|..|||||||||||.||.||||||||||||||.
BL01012___ger     50 TAACAGCTTGTGCTCCCACGGACCAAGCAGCTGAGATGGACTATGATCAA     99

BSNT_00264___    100 ACCAAAAAAATGGTTGTTGATATATTAAAAACTGATGATGGAAAGAAAGC    149
                     |||||||||||||||||.|||||||||||.||.|||||.|||||.|||||
BL01012___ger    100 ACCAAAAAAATGGTTGTCGATATATTAAAGACAGATGACGGAAAAAAAGC    149

BSNT_00264___    150 TATTAAGGAATTATTAAATGATGATGCCA---TGAATGAAGCGCTGGTGA    196
                     .|||.|.|||.|||||||||||||   ||   |.||||||.|.||.||.|
BL01012___ger    150 GATTCAAGAAATATTAAATGATGA---CAAATTAAATGAAACACTTGTAA    196

BSNT_00264___    197 TTGACCAAGATGCAATTAAAGGAACAATAGAAAAAACACTCACATCTAAA    246
                     |.||..||.|..|..|.||||.|||..|.|||||||||.|.||.||.|||
BL01012___ger    197 TGGATGAAAAAACTGTCAAAGAAACCGTTGAAAAAACAATGACCTCCAAA    246

BSNT_00264___    247 AAAGGTGAAGAATTTTGGAAAAACATCTTTGAAGACACTGATTTTGCTGA    296
                     |||||.|..||||||||||||||..||||||||||..|..|.||.|||||
BL01012___ger    247 AAAGGAGCTGAATTTTGGAAAAAAGTCTTTGAAGATCCAAAATTCGCTGA    296

BSNT_00264___    297 GGGCTTTGCCAAAACTCTTCAGACAGAGCATGAAAAAGTGATTAAAAAGC    346
                     .||||||||||||||.|||||.|..||.||||||||||||.|.|||||.|
BL01012___ger    297 AGGCTTTGCCAAAACACTTCAAAATGAACATGAAAAAGTGCTGAAAAAAC    346

BSNT_00264___    347 TGATGAAGGATCCAGATTACCAGAAGATGCTGATG-AGCGTTATGCAGGA    395
                     |||||||.|||||.||.|||||.||.||||||||| || ||.||||||||
BL01012___ger    347 TGATGAAAGATCCTGAGTACCAAAAAATGCTGATGCAG-GTCATGCAGGA    395

BSNT_00264___    396 TCCCGGCATGGATAAAAAGTACAGCCAGCTGGCAAAAAGCCAAGAATTCC    445
                     |||.|..||||..|||||.|||.|..|.||.|..|.||||||.|||||||
BL01012___ger    396 TCCTGAAATGGCCAAAAAATACGGTGAACTTGTCAGAAGCCAGGAATTCC    445

BSNT_00264___    446 GCAGTTATTTAGAAGAGGTTATTAAC-GAAACACTTTCTAGTCCGCTTTA    494
                     |.||..|..|..|.||.||.| ||.| ||.||.||..|.||.||.|||||
BL01012___ger    446 GAAGCCACCTGCAGGAAGTCA-TATCTGACACTCTGACAAGCCCTCTTTA    494

BSNT_00264___    495 CAAAAAGCAGTTCGAAGATGAGCTGAAAAAAGC----------AGCA--A    532
                     ||.|||||||||.|||||.||.|||||||||||          ||||  |
BL01012___ger    495 CAGAAAGCAGTTTGAAGAGGAACTGAAAAAAGCTGCTGCTGAAAGCATGA    544

BSNT_00264___    533 AAGACACAGCCAAA-GAAA----GTGAATAA------------    558
                     ||||   ||  ||| ||||    |.|||.||            
BL01012___ger    545 AAGA---AG--AAATGAAAGGCGGCGAAGAAAAACAAAGCTGA    582


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