Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00229 and BL01042

See Amino acid alignment / Visit BSNT_00229 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence dna-align/BSNT_00229___rpsQ.1.5803.seq
#    -bsequence dna-align/BL01042___rpsQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00229___rpsQ-BL01042___rpsQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00229___rpsQ-BL01042___rpsQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00229___rpsQ
# 2: BL01042___rpsQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 264
# Identity:     245/264 (92.8%)
# Similarity:   245/264 (92.8%)
# Gaps:           0/264 ( 0.0%)
# Score: 1149.0
# 
#
#=======================================

BSNT_00229___      1 ATGAGCGAACGTAACCAACGCAAAGTTTACCAAGGCCGTGTTGTTTCTGA     50
                     |||||||||||.||.||.||||||||.||||||||.||||||||||||||
BL01042___rps      1 ATGAGCGAACGCAATCAGCGCAAAGTCTACCAAGGACGTGTTGTTTCTGA     50

BSNT_00229___     51 CAAAATGGATAAAACCATTACTGTTGTTGTTGAGACATACAAAAAACATA    100
                     ||||||||||||||||||||||||||||||.||.|||||||||||.|||.
BL01042___rps     51 CAAAATGGATAAAACCATTACTGTTGTTGTAGAAACATACAAAAAGCATT    100

BSNT_00229___    101 CACTTTACGGTAAACGCGTAAAATACTCAAAAAAATTCAAAGCACATGAT    150
                     ||||.|||||||||||||||||.|||||.|||||||||||||||||||||
BL01042___rps    101 CACTCTACGGTAAACGCGTAAAGTACTCTAAAAAATTCAAAGCACATGAT    150

BSNT_00229___    151 GAAAATAATCAAGCTAAAATCGGTGACATCGTTAAGATCATGGAAACTCG    200
                     ||||||||.||||||||||||||.||||||||.|||||||||||||||||
BL01042___rps    151 GAAAATAACCAAGCTAAAATCGGAGACATCGTAAAGATCATGGAAACTCG    200

BSNT_00229___    201 TCCATTGTCTGCAACTAAGCGTTTCCGTCTAGTTGAAGTTGTCGAAGAAG    250
                     ||||||.|||||.|||||.|||||.|||||||||||||||||||||||||
BL01042___rps    201 TCCATTATCTGCGACTAAACGTTTTCGTCTAGTTGAAGTTGTCGAAGAAG    250

BSNT_00229___    251 CTGTTATTATCTAA    264
                     ||||||||||||||
BL01042___rps    251 CTGTTATTATCTAA    264


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.