Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01730 and BL01076
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_01730___yhgE.1.5803.seq
# -bsequence dna-align/BL01076___yhgE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01730___yhgE-BL01076___yhgE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01730___yhgE-BL01076___yhgE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01730___yhgE
# 2: BL01076___yhgE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2519
# Identity: 1489/2519 (59.1%)
# Similarity: 1489/2519 (59.1%)
# Gaps: 547/2519 (21.7%)
# Score: 4042.5
#
#
#=======================================
BSNT_01730___ 1 ATGAA------CACAATACGAAGTCAGTGGAAAGACATCGTAACAAGTAA 44
||||| || ||.|| |||||||.|||..|..||||.|.|||
BL01076___yhg 1 ATGAATGTTTTCA-AAAAC-----CAGTGGAGAGAACTGATAACCAATAA 44
BSNT_01730___ 45 AAAATTATTGATTCCCATCATCGCCATTTTGTTTGTCCCGCTTATTTACA 94
||||.||.||||..||.|.||||...||.|.|||.|.|||||.|||||||
BL01076___yhg 45 AAAACTACTGATATCCGTGATCGGGGTTCTCTTTATACCGCTGATTTACA 94
BSNT_01730___ 95 GCGGCGTATTCTTAAAGGCTTATTGGGACCCGTACGGCACAGTTGACCAG 144
||.||.||||.||...||||||.||||||||.|||||.|..||.||.|||
BL01076___yhg 95 GCAGCATATTTTTGGCGGCTTACTGGGACCCATACGGAAACGTCGATCAG 144
BSNT_01730___ 145 CTGCCTGTCGTTGTCGTCAA--CCAAGACAAGGGAGCAACGTATGAAGGA 192
||.|||||.|..||.||.|| || ||||||||..|.||.|||||||||
BL01076___yhg 145 CTCCCTGTGGCGGTTGTGAATTCC--GACAAGGGGACGACATATGAAGGA 192
BSNT_01730___ 193 GAAAAACTTCAAATCGGTGATGATCTGGTCAAAGAATTAAAGGATAATAA 242
.||.|.|||||.|||||.||.||.||.|||||||||.|.||.||.||..|
BL01076___yhg 193 AAAGACCTTCATATCGGCGACGACCTTGTCAAAGAACTGAAAGAAAACGA 242
BSNT_01730___ 243 CAACTTTGATTGGCATTTTTCCAATGATCTCGACCAATCGTTAAAGGACT 292
.||.||.||.||||||||| .||||.|| .|..||||.|.|
BL01076___yhg 243 TAAATTCGACTGGCATTTT----------ACGACGAA-GGAAAAAGCAAT 281
BSNT_01730___ 293 TA-----TTG---AATCAAAAATATTATTTAGTTGTCGAGATTCCTGAGG 334
.| ||| |||.|..||||.||..|.|||||.||.||.|||||..
BL01076___yhg 282 GAGAGGCTTGCAAAATGAGGAATACTACATGGTTGTAGAAATCCCTGAAA 331
BSNT_01730___ 335 ATTTTTCTAAGAATGCCAGCACCGTGTTGGACAAAAATCCAAAAAAATTG 384
|.|||||.|||.||||||||||.||..||||.|||.||||.|||||..||
BL01076___yhg 332 ACTTTTCGAAGGATGCCAGCACGGTTATGGATAAACATCCGAAAAAGCTG 381
BSNT_01730___ 385 GATCTGAAATACCATACAAATGCCGGTTCCAACTATGTAGGGGCAACGAT 434
.||||||..||.||||||||.|||||....||||||||.||.||...|||
BL01076___yhg 382 AATCTGATTTATCATACAAACGCCGGACGAAACTATGTCGGCGCCCAGAT 431
BSNT_01730___ 435 CGGTGAAAAAGCGATTGATAAACTGAAAGCTTCTG--TT--------TCT 474
|.|.||.||||||||||| |.||||||.| || |||
BL01076___yhg 432 CAGCGATAAAGCGATTGA-------ACAGCTTCAGCATTCAGTCGGCTCT 474
BSNT_01730___ 475 AAAGAAGTGACAGAGCAATATACGAAAGTTATTTTTGATAACTTT----A 520
|||.|.||.|||||||||.|..||||.||.|||||.|| ||| |
BL01076___yhg 475 ---GAAATCACGGAGCAATATGCTGAAGTCATCTTTGACAA-TTTCGGCA 520
BSNT_01730___ 521 AAGATATCGCAAAAGGTTTGAGCGACGCGAGCAGCGGCGCGAAAAAAATT 570
|| ||.|||||||||.|..|.||.||.|||...||.||...|||..|.
BL01076___yhg 521 AA---ATTGCAAAAGGTCTCGGTGAAGCAAGCGAAGGAGCCGGAAAGCTG 567
BSNT_01730___ 571 GATGACGGCAC--AAAGGATGCGAAAAACGGAAGCGCACAGCTGAAAGAA 618
|||.|.|| || ||| |||||||||.|.|||||||.|.||||||||.|.
BL01076___yhg 568 GATAAAGG-ACTGAAA-GATGCGAAAGAAGGAAGCGAAAAGCTGAAAAAG 615
BSNT_01730___ 619 AATCTGGCGAAGCTGAAGGAAAGCACCGCTACCA---TCAGTGACAAAAC 665
||.||.|..|||||...|.|||| ||| ||||| .|||.|.
BL01076___yhg 616 AACCTTGAAAAGCTCGCGAAAAG--------CCAAATTCAGT-TCAACAA 656
BSNT_01730___ 666 AG-CGCAGCTTGCAGATGGAG-----CGGCTCAGGTGACGAGCGGCATCC 709
|| ||.| |||||| |||| |||||||.|
BL01076___yhg 657 AGACGGA--------ATGGAGAAGTTCGGC-----------GCGGCATTC 687
BSNT_01730___ 710 AATCAC-TTGATAGCTCGCTCGGTAAATTCCAGGACAGCAGCAACCAGAT 758
||| || .||| |.|||| |.||
BL01076___yhg 688 AAT-ACGCTGA--------------------ACGACA---------AAAT 707
BSNT_01730___ 759 TTATGA---TAAATCTAGTCAGCTTGCAGCAGGATCAGGCAAGATAACG- 804
|.|||| |.|.||..| ||||||| ||...|..||.|| ||.|
BL01076___yhg 708 TCATGAGCTTGATTCCGG---GCTTGCA-CAATTTTTGGAAA---AAAGC 750
BSNT_01730___ 805 GGCAAGCTGAATGAACTGAATGCCGGCCTTCAAAAGGTGCAGCAGGGCTT 854
|||.||| ||.||.| |||...||||.||.|.||.||.|||.|
BL01076___yhg 751 GGCCAGC----TGCACAG-----CGGTGCTCAACAGCTCCAACAAGGCAT 791
BSNT_01730___ 855 GCCT---AATCTGACAAACGGG-CTGGATCAGCTCAACAGTAAAGCGCAA 900
|||| |.|.|| .|||| .||||.|||.|.||....||||||| |
BL01076___yhg 792 GCCTCAGATTGTG----GCGGGATTGGAGCAGATGAATGAAAAAGCGC-A 836
BSNT_01730___ 901 GAAGGTTCTGAGAAAGCA-----GCAAAAGCG---------GAAAAACTT 936
||||.| ||||| |.|.||||| ||||||.||
BL01076___yhg 837 GAAGAT-------AAGCAAACTCGAAGAAGCGATTTCAAATGAAAAAATT 879
BSNT_01730___ 937 -ATAAATGC-GCTCGATTTAACGAAGCTTGAAACAGCTGTGAATAACCTC 984
| || |||||| ||||..||||..||..|| .|||.|| .|
BL01076___yhg 880 CA-----GCAGCTCGA---AACGGCGCTTTCAAATGC--CGAAAAA--GC 917
BSNT_01730___ 985 GAAAAGTCAGAAA-CAGCGATGAAGGAATTTAAAAAA-------CAGCTG 1026
||||| .||||| ||||.| ||.||..||||| .||||
BL01076___yhg 918 GAAAA--AAGAAATCAGCCA-----GATTTCGAAAAATATTGATGAGCT- 959
BSNT_01730___ 1027 TCTGA-----CTTTGAAAA--CAGCTTAAAAAACCGTGATCAGGCATTCA 1069
||| |.||||||| |||| ||.|.|| ||.||..||
BL01076___yhg 960 --TGAAGCGGCATTGAAAAACCAGC-------ACAGCGA--AGTCAAACA 998
BSNT_01730___ 1070 AA------AATCTCATCAACTCGAGTGATTTCTTA-ACAGCAGAGCAAAA 1112
|| |||| ||.|||| .|.||.| ||| |||.| |.|
BL01076___yhg 999 AATTATTGAATC-CAGCAAC--------ATGCTGACACA--AGAAC-AGA 1036
BSNT_01730___ 1113 AAGCCAGTTGATCAGCTCTGTTGAAAAGCAGCTTCCGAAAGTTGATG--- 1159
||||| ||.||..||||| .||||.||||
BL01076___yhg 1037 AAGCC---------GCGCTTATGAAA-----------CAAGTCGATGAAA 1066
BSNT_01730___ 1160 ---------CG---------CCTGATTTTGA-----TGAAATTTTAAGTG 1186
|| |||||.||||| ||||| |
BL01076___yhg 1067 AAATGGGAACGGTGAAACTCCCTGAGTTTGACAAGTTGAAA--------G 1108
BSNT_01730___ 1187 GGC---TTCC----TTCAGC------------TGATCAGCTGCCTGACAT 1217
.|| |||| .||||| |.||| |.|.||||
BL01076___yhg 1109 CGCAAATTCCCGATGTCAGCGAACTTCCCGATTTATC--CGGGCTGA--- 1153
BSNT_01730___ 1218 CGCAACGATAAAAAGCTCATTGGAAGATGTGAAAGCGCAGGTTGCCC--- 1264
||| |.|||| |.||.||..|||| ||..|| |||
BL01076___yhg 1154 ---AAC----AGAAGC----TTGAGGAATTGAA---GCGAGT--CCCTTC 1187
BSNT_01730___ 1265 --AGGTGAAGGCATTGCCGGAAGCTACCTCTAAACTTTATAACGG--CGC 1310
|.||||| ||||||||||||.|| |||
BL01076___yhg 1188 GGATGTGAA---------------------TAAACTTTATAAAGGATCGC 1216
BSNT_01730___ 1311 AAAAGCCACTCAAGACGCGATTGACAAATTAACTGCTGGATCTGAGAAAT 1360
|.||| |.|||..|.|.|.|||
BL01076___yhg 1217 AGAAG--ATTCAGCAAGGGCTTG--------------------------- 1237
BSNT_01730___ 1361 TATACAATGCGTCACAGCAGGTGACAGATGGCCAAACTAAACTGACAGCC 1410
||||| ||||||..|
BL01076___yhg 1238 ------ATGCG------------------------------CTGACAAAC 1251
BSNT_01730___ 1411 GGCATCGGTGAATATAATAAGCAGTTCGCA-AAGGCAAAAGCGGGCTCAG 1459
||..|.||||..||.||..|..|.|||||| |||..|||||| ||.|||.
BL01076___yhg 1252 GGTTTGGGTGCTTACAACGAAAAATTCGCAGAAGCGAAAAGC-GGATCAT 1300
BSNT_01730___ 1460 AGCAATTGGTGACAGGAAGCAGCCA------AGTATCCGGCGGATTGTT- 1502
...||.|.| |.|.|.||||||| ||| ||||..|||
BL01076___yhg 1301 CCAAAATCG---CCGAAGGCAGCCAGACGTTAGT------CGGAAAGTTC 1341
BSNT_01730___ 1503 --TAAGCTGTTAGACGGGTC---TAAACAGGTCCAAAG-CGGATCATCAA 1546
..|.|||..|..||.|.| |||||.| |||| |||.||.||.|
BL01076___yhg 1342 GGCGATCTGCAAAGCGCGGCCGATAAACTG----AAAGACGGTTCTTCCA 1387
BSNT_01730___ 1547 AACTGGCAGACGGATCTGCATCACTTGATACAGGTTTAGGCAAGCTGTTG 1596
||||.|||||.||..||..|||.||||||..||||.|.||||||||||..
BL01076___yhg 1388 AACTTGCAGAAGGGGCTAAATCCCTTGATGAAGGTCTTGGCAAGCTGTCT 1437
BSNT_01730___ 1597 GACGGCACAGGAGAGCTGTCTAGTAAGCTGAAGGATGCGGCTGACCAAAC 1646
|||||.|..||.|||||||.|..|||||||...||.||.||.||.|||||
BL01076___yhg 1438 GACGGAAGCGGGGAGCTGTTTGATAAGCTGTCTGACGCTGCCGATCAAAC 1487
BSNT_01730___ 1647 AGGAGATATCGATGCTGATGATCAA----ACATATGGCATGTTTGCGGAT 1692
.||.|||||..|.||.|..||..|| ||| || |||||..|.||.
BL01076___yhg 1488 CGGCGATATTCAAGCGGGAGACGAAAACTACA-AT---ATGTTCTCAGAC 1533
BSNT_01730___ 1693 CCGGTAAAAACCAAAGATG----ATGCCAT----TCATTCCG--TTCCTA 1732
||.|| .|||| |.||.|| ||..|||| |||| |
BL01076___yhg 1534 CCCGT---------TGATGTGAAAGGCGATAAAATCGATCCGGTTTCC-A 1573
BSNT_01730___ 1733 ACTACGGTACAGGGCTGACACCTTATATCCTGTCAATGGGCTTATATGTC 1782
|||||||.|||||..|.||.||.||||||.||||..|.|||||||..|||
BL01076___yhg 1574 ACTACGGAACAGGATTAACCCCGTATATCTTGTCGCTCGGCTTATTCGTC 1623
BSNT_01730___ 1783 GGCGGCA-TCATGCTGACGGTTGTCTTCCCGCTGAAGGAAGC-----GTC 1826
||| ||| |.|||.|.||.|||||||||....||||.| ||| |||
BL01076___yhg 1624 GGC-GCATTGATGATTACCGTTGTCTTCGATGTGAAAG-AGCCGGCTGTC 1671
BSNT_01730___ 1827 AGGACGTCCGAGAAAT--GGTTTTGAGTGGTTCTTCAGCAAATTCAATGT 1874
.| |.||| ||| |..||||..|||||..|.||||||||||..|
BL01076___yhg 1672 CG---GCCCG---AATCAGCCTTTGGCTGGTTTATGAGCAAATTCAGCG- 1714
BSNT_01730___ 1875 CATGATGCTT------GTAGGAATCATTCAATCATTGATTG--TGGCGAC 1916
||||| ||.|||||..|||||.|...||||| || .||
BL01076___yhg 1715 -----TGCTTTTTGCAGTGGGAATTCTTCAAGCGGCGATTGCCTG--CAC 1757
BSNT_01730___ 1917 GGTTCTTCTTCT-GGGAATTGGTCTCGAGGTTGAGAGCACGTGGAGATTT 1965
|.|..||| ||| |||.||.||.||.||.||..|.|||...||||||||.
BL01076___yhg 1758 GATCATTC-TCTGGGGCATCGGGCTTGAAGTGCAAAGCGTCTGGAGATTC 1806
BSNT_01730___ 1966 TACGTGTTTACGATTATTACGAGTCTCGCTTTCCTGGCAATGATTCAATT 2015
||..||||.|..||.||.|.|||..|..|.|..||.||.||.|||||.||
BL01076___yhg 1807 TATCTGTTCAGTATAATCATGAGCATTACATGTCTTGCGATCATTCAGTT 1856
BSNT_01730___ 2016 TTTGGCCACGACAATGGGCAACCCGGGACGATTTATCGCAGTCATTATTT 2065
||||||..||||||||||.||.|||||||||||.||.||.||||||.|..
BL01076___yhg 1857 TTTGGCTGCGACAATGGGAAATCCGGGACGATTCATTGCCGTCATTCTGC 1906
BSNT_01730___ 2066 TAGTGCTGCAGCTGGGAGCAAGCGGAGGAACCTTCCCGCTTG-AATTGCT 2114
|.|||||.|||||.||||.||||||||||||.||.||.|||| |.||| |
BL01076___yhg 1907 TCGTGCTTCAGCTTGGAGGAAGCGGAGGAACATTTCCTCTTGCACTTG-T 1955
BSNT_01730___ 2115 CCCGAATTTCTATCAGGTCATCCATGGCGCATTGCCGATGACCTACAGCA 2164
|||.||.||||..||||||||||||...|||.||||||||||||||||||
BL01076___yhg 1956 CCCTAAGTTCTTCCAGGTCATCCATTCTGCACTGCCGATGACCTACAGCA 2005
BSNT_01730___ 2165 TTAACGGATTCAGAGCGGTCATTTCAAACGGTGACTTTGGCTACATGTGG 2214
||..|||||.|||||||||.|||||||.|||.||||..|..||.||||||
BL01076___yhg 2006 TTGCCGGATACAGAGCGGTGATTTCAAGCGGAGACTACGCGTATATGTGG 2055
BSNT_01730___ 2215 CAGATGGCCGGCGT-CTTAATCGGC---ATCGCCCTCGTCATGATTGCAC 2260
.|...|||.|.||| | ||||| .|.||..||||||||||.||.|
BL01076___yhg 2056 GAACAGGCTGCCGTGC----TCGGCGGTGTTGCGATCGTCATGATGGCTC 2101
BSNT_01730___ 2261 T-AAGCATTACTTACTTTACAATGTTAAGCCGGAAGGAAGAAACATCAGA 2309
| |.|| |.|.|||.||||.|.||.| ||.|.||..|.||||.|| .||
BL01076___yhg 2102 TGACGC-TGATTTATTTTAAAGTGCT--GCTGAAAAAAGGAAAAAT-TGA 2147
BSNT_01730___ 2310 AGAACAGCGGGCTTCATAA 2328
|||.|||| .|.|||||
BL01076___yhg 2148 AGAGCAGC---ATGCATAA 2163
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