Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01736 and BL01077

See Amino acid alignment / Visit BSNT_01736 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence dna-align/BSNT_01736___yhfE.1.5803.seq
#    -bsequence dna-align/BL01077___yhfE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01736___yhfE-BL01077___yhfE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01736___yhfE-BL01077___yhfE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01736___yhfE
# 2: BL01077___yhfE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1081
# Identity:     799/1081 (73.9%)
# Similarity:   799/1081 (73.9%)
# Gaps:          83/1081 ( 7.7%)
# Score: 2912.0
# 
#
#=======================================

BSNT_01736___      1 ATGACGTCTGTACGTAAAACGATGGAGCTCATTAAAGAACTGGTATCGAT     50
                        |.|||.|.||..|||||||||||||||||.||.||.||.||.||.||
BL01077___yhf      1 ---ATGTCAGGACAGAAAACGATGGAGCTCATCAAGGAGCTCGTCTCCAT     47

BSNT_01736___     51 CCCAAGCCCGACCGGAAATACATATGAGGTGATCAATTATATTGAAAGCC    100
                     |||.|||||.|||||||||||.|||||..|.||..|.|||||..|..|||
BL01077___yhf     48 CCCGAGCCCTACCGGAAATACGTATGACATTATAGACTATATCAACCGCC     97

BSNT_01736___    101 TTTTA---AAAGAATGGAAGGTAGAAAC--GGTTCGGAACCACAAGGGCG    145
                     |||||   |||||| |||  ||.|||||  ||  |..||||..||.||||
BL01077___yhf     98 TTTTAGAGAAAGAA-GGA--GTTGAAACAAGG--CATAACCGTAAAGGCG    142

BSNT_01736___    146 GCTTAATTGCAACGCTTCCAGGACGC-GACACATCCCGGCATCGCATGCT    194
                     ||.|.||.||.|||.|.|| ||.|.| ||||.|||||||||..|.|||||
BL01077___yhf    143 GCCTGATCGCGACGATACC-GGGCTCTGACAAATCCCGGCACAGGATGCT    191

BSNT_01736___    195 GACTGCGCACGTTGACACCCTCGGCGCTATGGTAAAGGAAATTAAAGCGG    244
                     |||.||.||.||.||.||||||||.||||||||.||.||.||||||.||.
BL01077___yhf    192 GACCGCTCATGTCGATACCCTCGGAGCTATGGTGAAAGAGATTAAACCGA    241

BSNT_01736___    245 ACGGCCGGCTGAAAATCGATTTAATCGGCGGGTTCCGCTACAACTCGATT    294
                     ||||..||||||||||.|||||||||||.||.|||...||||||||||||
BL01077___yhf    242 ACGGAAGGCTGAAAATTGATTTAATCGGGGGCTTCAATTACAACTCGATT    291

BSNT_01736___    295 GAGGGGGAGTATTGCCAAATTGAAACCGCCTCAGGAAAAACGTACACAGG    344
                     ||.||.|||||||||.|.||||||||.||.||.||.|||||.|||||.||
BL01077___yhf    292 GAAGGCGAGTATTGCAACATTGAAACAGCATCTGGGAAAACTTACACCGG    341

BSNT_01736___    345 CACAATCTTAATGCATCAAACGTCTGTGCACGTATACAAAGACGCGGGAA    394
                     |||.||||||||||||||.||.||.|||||.||||||||||||||.||||
BL01077___yhf    342 CACCATCTTAATGCATCAGACATCAGTGCATGTATACAAAGACGCCGGAA    391

BSNT_01736___    395 AGGCTGAGCGGAATCAAGAGAATATGGAGATCCGCCTAGATGAACCTGTT    444
                     |.||.||||||||.||..|.|||||||||.|||||.|.||.||||| |.|
BL01077___yhf    392 AAGCCGAGCGGAACCAGAAAAATATGGAGGTCCGCATTGACGAACC-GGT    440

BSNT_01736___    445 CACTGCCGGA-AAGATACGGAGGAGCTTGGCATTGGCGTCGGAGATTTTG    493
                     ||.|...|.| ||||.||...||.|||.|||||....|||||.||||||.
BL01077___yhf    441 CAATAGTGAAGAAGAAACCCGGGCGCTCGGCATCAATGTCGGCGATTTTA    490

BSNT_01736___    494 TGTCGTTTGATCCCCGTGTCGAGATCACATCAAGCGGATTTATTAAATCG    543
                     |.||.||.|||||.||.||.||.|||||..|.|||||.|||||.||||||
BL01077___yhf    491 TCTCCTTCGATCCGCGCGTTGAAATCACGCCGAGCGGGTTTATCAAATCG    540

BSNT_01736___    544 CGCCATTTGGATGACAAAGCAAGCGTCGCCTTATTGCTCC-------GCT    586
                     ||.|||.|.||.||.|||||||||||||||      ||||       |||
BL01077___yhf    541 CGTCATCTCGACGATAAAGCAAGCGTCGCC------CTCCTCATCGAGCT    584

BSNT_01736___    587 TAATTCATGAA--ATTCAA-ACAGAA-----GACATTGAGCTGCCGTATA    628
                     .|  ||| |||  | |||| ||||||     ||||     |||||.||||
BL01077___yhf    585 GA--TCA-GAACCA-TCAACACAGAAGGGATGACA-----CTGCCTTATA    625

BSNT_01736___    629 CAACCCATTTTCTTATTTCCAATAATGAAGAAATCGGTTACGGCGGGAAT    678
                     |.||.||.|||.|.||||||||.|||||||||||||||||.|||||.||.
BL01077___yhf    626 CGACGCACTTTTTAATTTCCAACAATGAAGAAATCGGTTATGGCGGCAAC    675

BSNT_01736___    679 TCGAATATTCCTCCTGAAACAGTTGAATATTTGGCGGTTGATATGGGGGC    728
                     ||.||.||.||.||||||||.||.|||||||||||.|||||||||||.||
BL01077___yhf    676 TCCAACATCCCGCCTGAAACGGTGGAATATTTGGCTGTTGATATGGGAGC    725

BSNT_01736___    729 TATCGGTGACGGGCAGGCGACAGATGAATATTCTGTATCAATCTGTGTGA    778
                     .|||||.||.||.|||.|.||||||||||||.|.|||||.||.|||||.|
BL01077___yhf    726 GATCGGCGATGGACAGTCAACAGATGAATATACGGTATCCATTTGTGTAA    775

BSNT_01736___    779 AGGATGCGAGCGGGCCGTATCATTATCAGCTCAGAAAGCATTTAGTTCAA    828
                     |||||||.|||||.||.|||||.||...|||..||||||           
BL01077___yhf    776 AGGATGCCAGCGGCCCATATCACTACGGGCTTCGAAAGC-----------    814

BSNT_01736___    829 TTAGCC------------GAGAAGCATCAT---ATTGACTATAAGCTTGA    863
                        |||            |.|||||| |||   ||.||.|||||||||||
BL01077___yhf    815 ---GCCTGACAGCCCTTTGTGAAGCA-CATGGAATCGATTATAAGCTTGA    860

BSNT_01736___    864 TATATATCCGTACTACGGGTCTGATGCGTCAGCAGCGATCAAATCCGGGC    913
                     |||.||.||.||||||||.||.|||||.|||||.||..|||||.|.||.|
BL01077___yhf    861 TATTTACCCATACTACGGTTCAGATGCTTCAGCGGCCGTCAAAGCGGGCC    910

BSNT_01736___    914 ATGATATTGTACATGGCCTCATAGGGCCGGGAATTGACGCTTCCCATGCA    963
                     |||||||.||.||.||.||.||.||.||||||||||||||.||||||||.
BL01077___yhf    911 ATGATATCGTCCACGGGCTGATCGGCCCGGGAATTGACGCATCCCATGCG    960

BSNT_01736___    964 TTTGAACGCACCCATAAATCATCTCTTCG-CCATACCGCTAAGCTTCTGT   1012
                     ||||||.|.||.|||.||||.|| |||.| .||.||.||.|||||.||||
BL01077___yhf    961 TTTGAAAGGACGCATCAATCGTC-CTTGGAGCAGACGGCAAAGCTGCTGT   1009

BSNT_01736___   1013 ATTACTATGTACAGTC--ACCAATGGTATAA   1041
                     ||.|||||||.|||||  ||  ||||.||||
BL01077___yhf   1010 ATCACTATGTTCAGTCTGAC--ATGGCATAA   1038


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