Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01755 and BL01086

See Amino acid alignment / Visit BSNT_01755 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:15
# Commandline: needle
#    -asequence dna-align/BSNT_01755.1.5803.seq
#    -bsequence dna-align/BL01086___yhfQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01755-BL01086___yhfQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01755-BL01086___yhfQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01755
# 2: BL01086___yhfQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1029
# Identity:     601/1029 (58.4%)
# Similarity:   601/1029 (58.4%)
# Gaps:         240/1029 (23.3%)
# Score: 1826.0
# 
#
#=======================================

BSNT_01755         0 --------------------------------------------------      0
                                                                       
BL01086___yhf      1 ATGAAGCACAAATATTTTGCTATTTTATTTTTATTGATGATATCAGTGAT     50

BSNT_01755         0 --------------------------------------------------      0
                                                                       
BL01086___yhf     51 GACGGCCTGCTCTGGAGGAAGCGAGAGCACGAAAACTTCCGGTCAGGATT    100

BSNT_01755         1 --GTGCC---TGAGCAT------------CCGAA---GCGG---------     21
                       |||.|   |.|||||            .||||   ||||         
BL01086___yhf    101 CCGTGACAGTTAAGCATGATCTTGGAGAAACGAAAGTGCGGAATAAACCG    150

BSNT_01755        22 ------GTTGTTGTTCTTGAGCTTGGTTTTATTGATACACTGCTTGATCT     65
                           |||||.||||||||..|.||.|||||||||.|.||.||||||..
BL01086___yhf    151 AAAAAAGTTGTGGTTCTTGAATTGGGATTTATTGATGCGCTCCTTGATGC    200

BSNT_01755        66 CGGCATTACGCCTGTCGGGGTTGCCGATGACAACAAAGCGAAGCAGCTGA    115
                     .||.||||.|||||||||..||||.||.|||..||||.|.|   ||.|.|
BL01086___yhf    201 GGGTATTAAGCCTGTCGGAATTGCGGACGACGGCAAACCTA---AGTTTA    247

BSNT_01755       116 TCAACAAGGATGT--GCTGAAGAAAATTGACGGCTACACATCTGTCGGCA    163
                     |.|||.||.|.||  |..||  |||||..|.||.||.||.||.|||||..
BL01086___yhf    248 TTAACGAGAAGGTCAGGGGA--AAAATCAAAGGGTATACTTCAGTCGGTT    295

BSNT_01755       164 CTCGCTCACAGCCAAGCATGCAAAAGATTGCTTCATTAAAACCCGATTTA    213
                     |.|||.|.|||||||||.|..||||.||||||||.|||||.|||||||||
BL01086___yhf    296 CGCGCGCCCAGCCAAGCTTTGAAAAAATTGCTTCTTTAAAGCCCGATTTA    345

BSNT_01755       214 ATTATTGCTGACACGACCCGGCATAAGAAG-GTGTACGATCAGCTGAAAA    262
                     ||||||||.||..|||.|.|||| .||..| ||.||.|||.|||||...|
BL01086___yhf    346 ATTATTGCCGATTCGAGCAGGCA-CAGCGGCGTCTATGATAAGCTGTCGA    394

BSNT_01755       263 AAATAGCGCCGACGATTGCGCTTAATAATTTAAATGCTGATTATCAGGAT    312
                     ||||.||||||||.||.|||||.||.||.||.|||||.|||||||||||.
BL01086___yhf    395 AAATTGCGCCGACAATCGCGCTCAAAAACTTGAATGCCGATTATCAGGAC    444

BSNT_01755       313 ACAATTGACGCTTCGCTTACGATTGCAAAAGCAGTCGGCAAGGAGAAG-G    361
                     ||..||||.||.||.|||||||||||.|||||.||||||||.|| ||| |
BL01086___yhf    445 ACGCTTGATGCATCTCTTACGATTGCGAAAGCCGTCGGCAAAGA-AAGCG    493

BSNT_01755       362 AAATGGAGAAAAA----GCTGATGGCGCATGAAGAAAAGCT-------TA    400
                     .||||||||||||    |||||    .|||.||.|||||||       |.
BL01086___yhf    494 CAATGGAGAAAAAATTGGCTGA----ACATAAACAAAAGCTGGATGAATT    539

BSNT_01755       401 GCGAGACAAAGCAGAAAAT---CAGCGCG--AACAGCCAGTCCGTGCTTT    445
                     |       ||.||||||.|   |||| ||  |||||  ||  |.|.|||.
BL01086___yhf    540 G-------AAACAGAAATTCGGCAGC-CGGAAACAG--AG--CATTCTTC    577

BSNT_01755       446 TGATCGGAAATACAAATGATACGATTA---TG-GCCAGGGATGAAAACTT    491
                     ||.||||.||.||||||||....||.|   || ||    |||||||||||
BL01086___yhf    578 TGCTCGGGAACACAAATGAAGAAATCACCGTGCGC----GATGAAAACTT    623

BSNT_01755       492 CTTTACATC-GAGACTTTTAACACAGGTCGGCTATCGATATGCAATC--A    538
                     .||.||.|| .|| |||.|.||..|..||||||||..|||.|...||  |
BL01086___yhf    624 TTTCACGTCTCAG-CTTCTGACGAAAATCGGCTATACATACGGTGTCGGA    672

BSNT_01755       539 GTACATCAGGCAATAGCGATTC--AAGCAATGGCGGCGACTCTGTGAATA    586
                     | |||.| |||||..|||||.|  ||  ||   |||.||.||.||.||||
BL01086___yhf    673 G-ACAGC-GGCAAAGGCGATGCCGAA--AA---CGGTGAATCCGTCAATA    715

BSNT_01755       587 TGAAAATGACACTGGAGCAGCTGC-TGAAAACAGATCCGGATGTGATCAT    635
                     |.||||||||.||.||.||||||| |||.|| ||||||.||.||.||..|
BL01086___yhf    716 TTAAAATGACGCTCGAACAGCTGCTTGAGAA-AGATCCCGACGTTATTGT    764

BSNT_01755       636 CCTGATGACAGGAAAAACAGATGACCTCGACGCCGACGTTAAACGCCCGA    685
                     |||||||||.|||.|||.||||.|..||||.|..||||..|||.|.||||
BL01086___yhf    765 CCTGATGACGGGAGAAAAAGATAAAGTCGATGAAGACGGGAAAAGACCGA    814

BSNT_01755       686 TCGAAAAGAATGTCCTTTGGAAAAAGCTGAAGGCAGTGAAAAACGGGCAT    735
                     |||||||..||...||||||||||||||.|..|||||.||||||||..|.
BL01086___yhf    815 TCGAAAAAGATCCTCTTTGGAAAAAGCTCAGCGCAGTCAAAAACGGCAAG    864

BSNT_01755       736 GTATACCACGTGGACCG-TGCGGTATGGTCTTTGCGCCGCAGTGTAGACG    784
                     ||.||..|.|..|||.| |.| |..|||||..|.||.|||||..|.||||
BL01086___yhf    865 GTTTATGAAGCCGACAGATTC-GCCTGGTCGCTCCGACGCAGCATTGACG    913

BSNT_01755       785 GGGCGAATGCCATTTTGGACG------------AGCTTC-----------    811
                     |.||..|||...|..||||.|            |.||||           
BL01086___yhf    914 GAGCAGATGAGCTGATGGATGAAATCGATCAGCATCTTCTGTCTGAGGAT    963

BSNT_01755       812 AAAAAGAGATGCCGGCTGCTAAGAAATAA    840
                     .||||||.||        ||.||      
BL01086___yhf    964 CAAAAGAAAT--------CTTAG------    978


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