Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01778 and BL01092

See Amino acid alignment / Visit BSNT_01778 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_01778___sipV.1.5803.seq
#    -bsequence dna-align/BL01092___sipV.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01778___sipV-BL01092___sipV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01778___sipV-BL01092___sipV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01778___sipV
# 2: BL01092___sipV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 547
# Identity:     360/547 (65.8%)
# Similarity:   360/547 (65.8%)
# Gaps:          68/547 (12.4%)
# Score: 1122.5
# 
#
#=======================================

BSNT_01778___      1 ATGAAAAAACGGTTTTGGTTTCTTGCCGGTGTAGTGTCCGTTGTTCTCGC     50
                     .|||||||.||.||||.|.|..|.|||||.|||.||   .||||..|||.
BL01092___sip      1 TTGAAAAAGCGTTTTTTGGTCATAGCCGGGGTACTG---CTTGTCATCGT     47

BSNT_01778___     51 C------ATTCAGGTTAAAAATGCTGTCTTTATTGATTACAAGGTAGAAG     94
                     |      ||||||||.||||||||.||.||.|||||.||.||.|||||||
BL01092___sip     48 CGTCGGGATTCAGGTCAAAAATGCCGTTTTCATTGAATATAAAGTAGAAG     97

BSNT_01778___     95 GCGTCAGTATGAACCCGACCTTCCAGGAAGGAAACGAATTGTTGGTCAAT    144
                     |||||||.|||||.||||||||.|||||.||.|||||..|.|||.||||.
BL01092___sip     98 GCGTCAGCATGAATCCGACCTTTCAGGAGGGCAACGAGCTTTTGATCAAC    147

BSNT_01778___    145 AAATTTTCGCATCGATTTAAAACCATCCATCGTTTTGACATCGTCCTTTT    194
                     |..||..|.||.||.||||||||.|||...||.|||||||||||.||.||
BL01092___sip    148 AGGTTCGCCCACCGCTTTAAAACGATCAGCCGATTTGACATCGTGCTGTT    197

BSNT_01778___    195 TAAAGGCCCTGATCATAAAG---TGCTGATTAAACGGGTAATC-GGCTTG    240
                     ||||||.||||   |.||||   |..|.||||||.||||.||| ||||| 
BL01092___sip    198 TAAAGGACCTG---ACAAAGATATATTCATTAAAAGGGTGATCGGGCTT-    243

BSNT_01778___    241 CCCGGTGAAACGATCAAATATAAAGATGATCAGCTGTATGTGAACG--GA    288
                     ||.||.|||||..|||..|||.|||||||||||||||||.|.||||  ||
BL01092___sip    244 CCGGGCGAAACCCTCAGGTATGAAGATGATCAGCTGTATATCAACGAAGA    293

BSNT_01778___    289 AAGCAGGTTGCTGAGCCATTTTTGAAGCATTTGAAATCTGTTTCTGCCGG    338
                     ||  ||.|....|||||.|.|.||.|..|.||.||..|.||..|.|||||
BL01092___sip    294 AA--AGATCAAAGAGCCTTATCTGGACGACTTAAAGGCCGTCACCGCCGG    341

BSNT_01778___    339 CAGCCATGTAACGGGTGATTTTTCTTTGAAAGATGTGACGGGA-ACAAGC    387
                     ..|..|..|.||.||.||||||.|..||.|.||.|||||.||| |..|| 
BL01092___sip    342 AGGGGACTTGACAGGGGATTTTACACTGCAGGAAGTGACCGGAGAGGAG-    390

BSNT_01778___    388 AAGGTGCCGAAAGGAAAA----TATTTTGTCGTTGGAGATAATCGCATAT    433
                     ||||||||    .|||||    ||.||.|||.|.||.||.||.||.||..
BL01092___sip    391 AAGGTGCC----TGAAAACGAGTACTTCGTCCTCGGGGACAACCGGATCC    436

BSNT_01778___    434 ACAGCTTCGACAGCCGGCATTTTGG-------TCCGATAAGAGAAAAAAA    476
                     |||||||.||||||||.|||||.||       ||       ||||....|
BL01092___sip    437 ACAGCTTTGACAGCCGCCATTTCGGCTTTGTTTC-------AGAACGGGA    479

BSNT_01778___    477 TATTGTCGG---TGTGATTTCTGA------TGCCGAATAA-------    507
                     .||.|||||   |||||   |.||      ||    ||||       
BL01092___sip    480 CATCGTCGGGATTGTGA---CGGAAAGAATTG----ATAAGAAGTGA    519


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