Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04796 and BL01094

See Amino acid alignment / Visit BSNT_04796 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:01
# Commandline: needle
#    -asequence dna-align/BSNT_04796___pucH.1.5803.seq
#    -bsequence dna-align/BL01094___pucH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04796___pucH-BL01094___pucH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04796___pucH-BL01094___pucH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04796___pucH
# 2: BL01094___pucH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1603
# Identity:     801/1603 (50.0%)
# Similarity:   801/1603 (50.0%)
# Gaps:         500/1603 (31.2%)
# Score: 1562.0
# 
#
#=======================================

BSNT_04796___      1 -------------------------ATGGCTTACG----------ATATG     15
                                              ||||.||| |          |.|||
BL01094___puc      1 ATGAATTTTGATTCAATTATCAAAAATGGATTA-GTCATTCTAGAAAATG     49

BSNT_04796___     16 GTGATAAAAG--GTGCGAAGGCAGTTACG----CCAGATGGCGTTATAGA     59
                     |||| |.|||  || |||||     ||.|    ..|||||||...||.|.
BL01094___puc     50 GTGA-ACAAGAAGT-CGAAG-----TAGGGATCAAAGATGGCAAAATCGC     92

BSNT_04796___     60 AGCTGAGATTGCAGTTCAAAACGGTGTCA----TTGCCGAGATAGGTTCT    105
                     |||               ||.||  ||||    |||        |||.| 
BL01094___puc     93 AGC---------------AATCG--GTCAGGATTTG--------GGTAC-    116

BSNT_04796___    106 GACATTGAA--GCAAGCGGGACGGAAATCATCCAGGCAGACGGGAAATA-    152
                            ||  ||||         ||||.|||.|.||| |..|||..|| 
BL01094___puc    117 -------AAGTGCAA---------AAATTATCGATGCA-AAAGGATCTAT    149

BSNT_04796___    153 CGTGTTTCCTGGTGTGATAGACTGC-CATGTTCATTTTAATGAACCGGGC    201
                     .||.|.|||.|||.||||.|| ||| |||||.|||.|.|..||.||||||
BL01094___puc    150 TGTATCTCCAGGTATGATTGA-TGCACATGTGCATATCACAGAGCCGGGC    198

BSNT_04796___    202 AGG----------GAGGATTGGGAGGGGTTTGAAACAGGTTCTCAAATGA    241
                      ||          ||.||.||||||||.|.|||.|||||       |..|
BL01094___puc    199 -GGCGGCTATCGTGATGAATGGGAGGGCTATGACACAGG-------AACA    240

BSNT_04796___    242 TG-GCCGC------AGGCGGTTGCACCACCTATTTTGATATGCCGCTCAA    284
                     .| |||||      |||||||...||.||.|.|.||||.|||||      
BL01094___puc    241 CGTGCCGCTGCAAAAGGCGGTGTAACGACGTTTATTGAAATGCC------    284

BSNT_04796___    285 CTGTATTCCATCAACCGTG------ACGGCAGA----GCATC--TTCTCG    322
                         |||..|||||  |||      ||||.|||    |.|||  |||..|
BL01094___puc    285 ----ATTAAATCAA--GTGCCAGCAACGGTAGATGAGGAATCTATTCAAG    328

BSNT_04796___    323 CAAAAGCTGAGCTAGGCAGACA---AAAATCTGCCGTGGATTTTGCGCTA    369
                     .||||..|.|   ||.|.||.|   |||||...|.||.||..|||||...
BL01094___puc    329 AAAAATTTAA---AGCCGGAAAAGGAAAATTATCAGTAGACGTTGCGAGT    375

BSNT_04796___    370 TGGGGCGGCCTTGTGCCAGGCCATATCGAGGACATCCGTCCGATGGCTGA    419
                     |..|||||..|.||     .||||.|    |||     |..|||||    
BL01094___puc    376 TACGGCGGTTTAGT-----ACCATTT----GAC-----TTAGATGG----    407

BSNT_04796___    420 AGCGGG----------------AGCGATCGGGTT--------TAAAGCGT    445
                        |||                |||.||.|.|||        ||||...|
BL01094___puc    408 ---GGGTATTCAAGAATTAGATAGCAATGGTGTTGTTGCATATAAATGTT    454

BSNT_04796___    446 TTTTATCAAAGTCAGGCACTGATGAGTTCCGCTCT-----------GTTG    484
                     |||||.|||..|..|||      ||   |||.|||           .||.
BL01094___puc    455 TTTTAGCAACATGTGGC------GA---CCGTTCTATAGAAGGAGATTTC    495

BSNT_04796___    485 ATGAACGGACATTGCT----------CAAAGGCATGGCAGAAATCGCGGC    524
                     |||||||.|.||..||          |.||||||||..|.||||.|||..
BL01094___puc    496 ATGAACGTAGATGACTATTCCCTCTACGAAGGCATGAAACAAATTGCGAA    545

BSNT_04796___    525 TGCAGGAAAAATCCTCGCTCTCCACGCGGAAAGCGATGCGATCACAAGCT    574
                     ..||||.|||||..|..||.|.|||||.||||   ||||   |.|||   
BL01094___puc    546 GACAGGCAAAATATTATCTATACACGCTGAAA---ATGC---CGCAA---    586

BSNT_04796___    575 ACTTGCAGAT-GGTTTTGGCCAATA------AAGGAAAGGTGGA------    611
                       ||.|.||| .|||..||..||||      ||  |||.|.|||      
BL01094___puc    587 --TTACCGATAAGTTAGGGGAAATAGCATCTAA--AAATGGGGAAACTTC    632

BSNT_04796___    612 --CGCGGATGCGTACGCCGCCTCCCG-CCCGGAGGAAGCAGAAGTTGAAG    658
                       .|||  |||.||.|..|..||.|| ||||.|...| |.|||||.|||.
BL01094___puc    633 ATTGCG--TGCTTATGTAGATTCTCGACCCGTATTTA-CTGAAGTAGAAC    679

BSNT_04796___    659 CGGTGTATCGCACG-------ATTCAGTATGCGAAGGTGACAGGCTGTCC    701
                     ||.| ||      |       ||||..|.||||||.|..||.||.||||.
BL01094___puc    680 CGAT-TA------GAAAAATTATTCTATTTGCGAAAGAAACGGGATGTCG    722

BSNT_04796___    702 GGTTCATTTTGTCCATATCAGC--------ACGG------CGAAAGCGGT    737
                     .||.||..|.||.||||| |||        |.||      |||||     
BL01094___puc    723 TGTACACATCGTTCATAT-AGCTTGTGAAGAGGGCGTAGACGAAA-----    766

BSNT_04796___    738 CCGGCTGATCAGAGAGGCGAAACAGGAAGGTCTTGATGTTTCGGTCGAGA    787
                          |..|||   |.||..||||||||||..|.|||.||.|...|||.|
BL01094___puc    767 -----TTGTCA---AAGCACAACAGGAAGGGGTCGATATTACATGCGAAA    808

BSNT_04796___    788 CATGCCCGCATTATGTCTTGTTCAGCCATGACGATTTACGGCAAAGGGGC    837
                     ||||..|.||.|||.|.|..|||....|.||.||..||...||.|..||.
BL01094___puc    809 CATGTACACACTATTTATATTTCTATAAAGAAGAACTAGATCATATCGGA    858

BSNT_04796___    838 TCTGTCGCAAAATGCGCGCCTCCGCTCCGGTCGCT--GCAATCAAAAGAG    885
                     .|.||.|.|||||||.|.||.||..||||     |  ||||||       
BL01094___puc    859 CCGGTTGTAAAATGCTCTCCGCCAATCCG-----TGAGCAATC-------    896

BSNT_04796___    886 ACGCTGA---------TCGAAACGCTCATT-GCCGGGGACATTGACA-TG    924
                     |||||.|         |.|||.||...||| ..|||.||.||| .|| |.
BL01094___puc    897 ACGCTTAGAAGGCATGTGGAATCGGGTATTAAACGGAGATATT-TCATTC    945

BSNT_04796___    925 GTTTCCTCAGACCATTCCCCCTG--CCGTCCATCCTTGAAGCGGGA----    968
                     ||..|.|||||||||||.||.||  ||  ||...|||.||     |    
BL01094___puc    946 GTAACATCAGACCATTCACCATGTACC--CCGGACTTAAA-----AGCTA    988

BSNT_04796___    969 -GGATAACATG--TTTTTATCATGGGGCGGAATCAGCGGCGGGCA-GTTC   1014
                      |||||  |||  |||..|.|.|||||.||.|||        ||| |||.
BL01094___puc    989 CGGATA--ATGCATTTGAAGCTTGGGGAGGTATC--------GCAGGTTT   1028

BSNT_04796___   1015 AC----------------TTTATTAGGAATGCTGGAACTGGCGCTTGAGC   1048
                     ||                .|||||.|  |||..||          ||.||
BL01094___puc   1029 ACAAAATAATGTCGATGTATTATTTG--ATGAAGG----------TGTGC   1066

BSNT_04796___   1049 A------TCAGATTCCGTTTGAAACCATCGCAGAATGGACAGC------G   1086
                     |      |.|.||.||.||   |.|||      |||...||||      .
BL01094___puc   1067 AAAAACGTAATATGCCATT---ATCCA------AATTTGCAGCCATTATT   1107

BSNT_04796___   1087 GCGGC---CCCTGCAAAACGAT------TCGGCCTTCAGAAAAAAGGGCG   1127
                     ||..|   ||||||.|||||.|      |||  |.||    ||||||..|
BL01094___puc   1108 GCTACAAACCCTGCGAAACGTTTTAATCTCG--CATC----AAAAGGCAG   1151

BSNT_04796___   1128 GCTTGAGGCGGGGTGTGATGCAGATTTCGTGCTCGTCA--------GCAT   1169
                     ..|||..|..|||...|||||.||||||||..|..|.|        ||| 
BL01094___puc   1152 TATTGCAGTAGGGAAAGATGCGGATTTCGTATTTATTAAGAAAGATGCA-   1200

BSNT_04796___   1170 GGAGCCGTACACTG--TTACAAGAGAATCGATG-----TTTGCAAAGCAT   1212
                         ||.||   ||  ||| |||      |.||     ||     |||||
BL01094___puc   1201 ----CCTTA---TGAATTA-AAG------GCTGAGGACTT-----AGCAT   1231

BSNT_04796___   1213 A-----AAAAAAGCATTTACGAAGGACATACATTTCCCTGCAGCATTTG-   1256
                     |     |.||||    ||    ||..|.||.|||..|| |||..|||.| 
BL01094___puc   1232 ATCGACACAAAA----TT----AGTCCGTATATTGGCC-GCAAAATTGGT   1272

BSNT_04796___   1257 GACCACTTACAGCAAAGGCCGATGC------GTGT-----ACAATGATGG   1295
                     |..||..||..|.|||   |.||.|      ||||     .|.|||||..
BL01094___puc   1273 GCTCAGGTAGTGAAAA---CAATCCTTCGCGGTGTCGAAATCTATGATAA   1319

BSNT_04796___   1296 GGAAAAGG-----TC-ACTGAAATTG-ACGGAGCTCTGGTCGTTCCTTCG   1338
                     .|||||.|     || |.|||||..| |.|.||.|    |..|||||   
BL01094___puc   1320 AGAAAAAGGAATTTCAAATGAAAAAGTAGGAAGAT----TTATTCCT---   1362

BSNT_04796___   1339 TAA   1341
                     |||
BL01094___puc   1363 TAA   1365


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