Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02090 and BL01098
See
Amino acid alignment /
Visit
BSNT_02090 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:34
# Commandline: needle
# -asequence dna-align/BSNT_02090___yjmC.1.5803.seq
# -bsequence dna-align/BL01098___yjmC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02090___yjmC-BL01098___yjmC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02090___yjmC-BL01098___yjmC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02090___yjmC
# 2: BL01098___yjmC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1237
# Identity: 621/1237 (50.2%)
# Similarity: 621/1237 (50.2%)
# Gaps: 410/1237 (33.1%)
# Score: 1258.5
#
#
#=======================================
BSNT_02090___ 1 TTGAAAACGATAACAATTGC----AGCTGAAGAAGCAAAGGAACTCGTTC 46
.||| |.|| |||| ||||.||..|||
BL01098___yjm 1 ----------------ATGCGCGTATCT----AAGC--AGGAGCTGTTTC 28
BSNT_02090___ 47 ---------GGCAAAAGCTGGCCGGTGCCGGTTTGAATGAACGAGATGCT 87
..||.||||||..|...||.||.||.||.|||.|||..||.
BL01098___yjm 29 ATTTAATCAAACAGAAGCTGATCAAAGCTGGATTAAACGAAGGAGCCGCA 78
BSNT_02090___ 88 GAAAAAGTAGCAGATGT-TCTCGTG-CA--CGCTGATTTGCGCAATG--- 130
.|..|.||..||||||| | || || |||.||| ||..|
BL01098___yjm 79 CACGATGTTTCAGATGTAT----TGACATTCGCCGAT-----CATAGAGG 119
BSNT_02090___ 131 --TACATTCGCATGG-------CGTGCTGCGCACAGAACACTATG-TGAA 170
|.|||||.||||| |||| || |||.|||||| .|||
BL01098___yjm 120 GATCCATTCCCATGGTGCAGTACGTG-TG------GAATACTATGCCGAA 162
BSNT_02090___ 171 C----------AGGC--TTTTAGCGGGAGGGATCAATC-----CTGGGGC 203
| |||| |.||| .|.|||.| || .|
BL01098___yjm 163 CGAATCGCAAAAGGCGGTATTA--------CAGCAAACCCAAACT---AC 201
BSNT_02090___ 204 ACAGCCTGTTTTTAAAGAAACGGGACCTGTGACCGGGGTGCTTGA-CGGA 252
||| |||.||.||||.|||||||...|||..|| |||.| ||||
BL01098___yjm 202 ACA-------TTTGAACAAACAGGACCTGCATCCGCCGT-CTTTAGCGGA 243
BSNT_02090___ 253 GACGATGGTTTCGGTAA------TGTGAATTGCGACATGGCGATGGACCA 296
||..||||....|||.| .|..|| ||| .||||||||..|
BL01098___yjm 244 GATAATGGCCCAGGTCACCAAGCAGCAAA-----ACA-AGCGATGGAAAA 287
BSNT_02090___ 297 TGCAATTGACATGGCGAAGAAAAAA-------------GGAGTCGGCATG 333
.|||||.||.||||| |||||| |..||.||||||
BL01098___yjm 288 AGCAATCGAAATGGC----AAAAAATTCAGGTGTTGCTGTTGTAGGCATG 333
BSNT_02090___ 334 ------GTTACGGCCGTAAACAGCAGCCATTGCGGAGCGCTAAGCTATTT 377
.||.|| |||.|.||.||..|..|.||.||
BL01098___yjm 334 AAGAATATTTCG---------------CATAGTGGTGCATTGGGTTACTT 368
BSNT_02090___ 378 TGTGCAAAAAGCCGCTGACGAAAAGCTAATCGGA-ATGG----------- 415
|||..|||..||.||.| ||..||| ||||
BL01098___yjm 369 TGTTGAAATGGCAGCAG----------AACAGGACATGGTTGCTTTAAGC 408
BSNT_02090___ 416 ------CAATGACGCATACAGA--CAGTATCGTTGTCCCGTTTGGGGG-- 455
|||| |||| || ||.||.||.||||||||.||
BL01098___yjm 409 ATGTGCCAAT--------CAGATCCA--ATGGTCGTACCGTTTGGAGGAA 448
BSNT_02090___ 456 GAGGAC--TCCTTTTTTAGGGACAAATCCGATTGCTT-------ACGGTG 496
.||.|| |.|||| ||.||.|||||.||||||| ||..|
BL01098___yjm 449 CAGAACCATACTTT----GGCACCAATCCAATTGCTTTTAGCGCACCAT- 493
BSNT_02090___ 497 TTCCGGCT-----AAGCATAAAAAACCGTTTATCCTAGATATGGCGACA- 540
||||| |.||||.|..| |.||| ||||||||||||
BL01098___yjm 494 ---CGGCTGATGAACGCATGATCA--CATTT------GATATGGCGACAA 532
BSNT_02090___ 541 ---TCCAAAGTGGCTTTTGGGAAGA-TTCTGCAGGCCCGTGAAGAGGGCA 586
|.|| ||| .|.|||||.| |..||.|.|| ||||.|..|
BL01098___yjm 533 CTGTTCA----GGC-ATGGGGAAAAGTATTGGATGC-----AAGAAGTAA 572
BSNT_02090___ 587 AA--GAA---ATTCCTGAAGGATGGGGAGTCGATGAAAACGGAGAAGCAG 631
|| ||| ||.||.|||..|||||.|||.||||.|..|||.|.|.||.
BL01098___yjm 573 AAATGAATCGATCCCGGAAACATGGGCAGTAGATGCAGCCGGTGCACCAA 622
BSNT_02090___ 632 TAACTGATCCTGACAAGATCGTC---TCACTTTCAACATTCGGCGGCCCG 678
.|||..||.| |..|||| ||| .|||||....||.|.|.|||.||.
BL01098___yjm 623 CAACGAATGC--AAGAGAT-GTCCATGCACTTGTGCCAATTGCCGGTCCA 669
BSNT_02090___ 679 AAAGGCTATGGACT-ATCGATTGTGGTGGATGTGTTTTCCGGATTGCTGG 727
|||||.||||||.| || |||..||||||||||.||.||.|
BL01098___yjm 670 AAAGGTTATGGATTGAT-GATGATGGTGGATGTCTTATCAG--------- 709
BSNT_02090___ 728 CGGGCGCGGC--TTTTGG---CCCTCATATTGCCAAAATGTACAGCGGCC 772
||.|| |.|||| .|||| ||.||..|.|||| |.|..||
BL01098___yjm 710 -----GCAGCCTTCTTGGAGTACCTC--ATGGCGTACATGT--ATCTTCC 750
BSNT_02090___ 773 TTG-ATCAA--------AAAAGAAAGCTGGGACATTACG----------T 803
.|| ||||| ||||| ||.|.|| .|||.| .
BL01098___yjm 751 ATGTATCAAGACCTGACAAAAG---GCCGAGA-TTTAGGGCAAATTCATA 796
BSNT_02090___ 804 TTGTGCGATCAATCCAGC---CTT------TTTTACTGACTGGGATACGT 844
|||| ||||||.||.|| ||| |||.|||| |.|
BL01098___yjm 797 TTGT--GATCAACCCTGCATACTTCACAGATTTAACTG---------CTT 835
BSNT_02090___ 845 TTTTAGAGCAGA--TGGATGCCATGATTGATGAACT----GCAGCAATCA 888
||..|.|.|||| |.|| |.|||.||||||||.| ||| || |
BL01098___yjm 836 TTAAACAACAGATTTCGA--CGATGCTTGATGAATTAAAAGCA-CA---A 879
BSNT_02090___ 889 CCGCC-------GGCTGTTGGATTCGAAAGAGTGTATGTGCCCGGCGAG- 930
|||.| ||||.|.|| |||| |.|||...||.||.|||
BL01098___yjm 880 CCGGCAGCAGAAGGCTATGGG----GAAA---TTTATTATCCGGGTGAGC 922
BSNT_02090___ 931 -------ATCGAGCAGCTGC--------ATGAAGAAAGAAATAAGAA--- 962
||..||.|| ||| ||.|||||.|||.| |||
BL01098___yjm 923 GCGGTAAATTAAGAAG-TGCAAAATATGATAAAGAAGGAATT--GAAATT 969
BSNT_02090___ 963 --AAACGGAATTTCCATCGCCCGGAGCGTGT------ATGAATTC-TTAA 1003
|.|||..||||..|.|..|| .|||.| ||| ||| |||.
BL01098___yjm 970 GTAGACGATATTTATAACTACC---TCGTTTCAGGCGATG--TTCATTAC 1014
BSNT_02090___ 1004 AA-----AGCAGGTGA--------------------- 1014
|| |.||.| ||
BL01098___yjm 1015 AATCGTTATCATG-GAAAGAATAGATTTGCAGAATAA 1050
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.