Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01747 and BL01111

See Amino acid alignment / Visit BSNT_01747 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:15
# Commandline: needle
#    -asequence dna-align/BSNT_01747___aprN.1.5803.seq
#    -bsequence dna-align/BL01111___apr.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01747___aprN-BL01111___apr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01747___aprN-BL01111___apr.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01747___aprN
# 2: BL01111___apr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1230
# Identity:     804/1230 (65.4%)
# Similarity:   804/1230 (65.4%)
# Gaps:         174/1230 (14.1%)
# Score: 2545.0
# 
#
#=======================================

BSNT_01747___      1 GTGAGAAGCAAAAA---ATTGTGGATCAGCTTGTTGTTTGCGTTAACGTT     47
                     .|||..||.|||||   .||.|||.|..|..||.||...||.||||.|.|
BL01111___apr      1 ATGATGAGGAAAAAGAGTTTTTGGCTTGGGATGCTGACGGCCTTAATGCT     50

BSNT_01747___     48 AATCTTTACGATGGCGTTCAGCAA---CATGTCTGCGCAGGCT--GCCG-     91
                     ..|.||.||||||||.||||||.|   |..||||||   .|||  |||| 
BL01111___apr     51 CGTGTTCACGATGGCCTTCAGCGATTCCGCGTCTGC---TGCTCAGCCGG     97

BSNT_01747___     92 -GAAAAAGCAGTACAGAAAAGAAATACATTGTCGGATTTAAG-CAGACAA    139
                      ||||||    |...||||||.|.||.||||||||||||||| |.|    
BL01111___apr     98 CGAAAAA----TGTTGAAAAGGATTATATTGTCGGATTTAAGTCGG----    139

BSNT_01747___    140 TGAGTG------CCATGAGTTCCGCCAAGAAAAAGGATGTTATTTCTGAA    183
                      |||||      .||     ||||.|   ||||||||..|.|    |.||
BL01111___apr    140 -GAGTGAAAACCGCA-----TCCGTC---AAAAAGGACATCA----TCAA    176

BSNT_01747___    184 AAA----GGCGGAAAGGTTCAAAAGCAATTTAAGTAT-GTTAACGCGGC-    227
                     |.|    ||||||||.||..|.|||||.||| ||.|| .|.|||||||| 
BL01111___apr    177 AGAGAGCGGCGGAAAAGTGGACAAGCAGTTT-AGAATCATCAACGCGGCA    225

BSNT_01747___    228 ----CGCAGCAACATTGGATGAAAAAGCTGTAAAAGAATTGAAAAAAGAT    273
                         ||.|||     |.||..||.||||..|..|.|||.|.|||||.|||
BL01111___apr    226 AAAGCGAAGC-----TAGACAAAGAAGCGCTTGAGGAAGTCAAAAATGAT    270

BSNT_01747___    274 CCGAGCGTTGCATATGTGGAAGAAGATCATATTGCACATGAATATGCGCA    323
                     |||...||.||.|||||||||||.|||||..|.||.||||..|..|||||
BL01111___apr    271 CCGGATGTCGCTTATGTGGAAGAGGATCACGTAGCTCATGCTTTGGCGCA    320

BSNT_01747___    324 ATCTGTTCCTTATGGCATTTCTCAAATTAAAGC---------GCCGGCTC    364
                     |.|.||||||||.||||||.|||..||||||||         ||.||   
BL01111___apr    321 AACCGTTCCTTACGGCATTCCTCTCATTAAAGCGGACAAAGTGCAGG---    367

BSNT_01747___    365 TTCACTCTCAAGGCTACACAGGCTCTAACGTAAAAGTAGCTGTTATCGAC    414
                           ||||||||||||..||..|.|||||||||||.||.||..|.||.
BL01111___apr    368 ------CTCAAGGCTACAAGGGAGCGAACGTAAAAGTCGCCGTCCTGGAT    411

BSNT_01747___    415 AGCGGAATTGACTCTTCTCATCCTGACTTAAACGTCAG-AGGCGGAGCAA    463
                     |..|||||..|..||||||||||.|||||.||||| || .||||||||||
BL01111___apr    412 ACAGGAATCCAAGCTTCTCATCCGGACTTGAACGT-AGTCGGCGGAGCAA    460

BSNT_01747___    464 GCTTCGTTCCTTCTGAAAC---AAACCCATACCAGGACGGCAGTTCTCAC    510
                     |||||||..||...|||.|   .|||    |||  |||||||.....|||
BL01111___apr    461 GCTTCGTAGCTGGCGAAGCTTATAAC----ACC--GACGGCAACGGACAC    504

BSNT_01747___    511 GGTACGCATGTCGCCGGTACGATTGCCGCTCTTAATAACTCAATCGGTGT    560
                     ||.||||||||.||||||||..|.||.||.|||.|.||..|||..|||||
BL01111___apr    505 GGCACGCATGTTGCCGGTACAGTAGCTGCGCTTGACAATACAACGGGTGT    554

BSNT_01747___    561 TCTGGGCGTAGCGCCAAGCGCATCATTATATGCAGTAAAAGTGCTTGATT    610
                     ..|.|||||.|||||.|.||.|||.||.||.||.||.||||||||..|||
BL01111___apr    555 ATTAGGCGTTGCGCCGAACGTATCCTTGTACGCGGTTAAAGTGCTGAATT    604

BSNT_01747___    611 CAACAGGAAGCGGCCAATATAGCTGGATTATTAACGGCATTGAGTGGGCC    660
                     |||..||||||||....||.|||.|.|||.|.|.|||.||.||||||||.
BL01111___apr    605 CAAGCGGAAGCGGATCTTACAGCGGCATTGTAAGCGGAATCGAGTGGGCG    654

BSNT_01747___    661 ATTTCCAACAA----TATGGATGTTATCAACATGAGCCTTGGCGGACCTA    706
                     |    |.||||    .||||||||||||||||||||||||||.|||||..
BL01111___apr    655 A----CGACAAACGGCATGGATGTTATCAACATGAGCCTTGGAGGACCAT    700

BSNT_01747___    707 CTGGTTCTACAGCGCTGAAAACA-GTAGTTGATAAAGCGGTTTCCAGCGG    755
                     |.||.||.||||||.|| ||||| |..|||||.||.||...|.|.||.||
BL01111___apr    701 CAGGCTCAACAGCGATG-AAACAGGCGGTTGACAATGCATATGCAAGAGG    749

BSNT_01747___    756 TATCGTCGTTGCTGCCGCAGCCGGAAACGAAGGTTCATCCGGAAGCACAA    805
                     ..|.|||||||..||.||.||.||.|||...||.||.||.||||.|||.|
BL01111___apr    750 GGTTGTCGTTGTGGCGGCTGCTGGGAACAGCGGATCTTCAGGAAACACGA    799

BSNT_01747___    806 GCACAGTCGGCTACCCTGCAAAATATCCTTCTACT-----ATTGCAGTAG    850
                     ..|||.|||||||.|||||.|||||     |.|||     ||.|||||.|
BL01111___apr    800 ATACAATCGGCTATCCTGCGAAATA-----CGACTCTGTCATCGCAGTTG    844

BSNT_01747___    851 GTGCGGTAAAC---AGCAGCAACCAAAGAGCTTCATTCTCCAGCGTAGGT    897
                     |.||||||.||   |.|||||||   |||||||||||.||||||||.||.
BL01111___apr    845 GCGCGGTAGACTCTAACAGCAAC---AGAGCTTCATTTTCCAGCGTCGGA    891

BSNT_01747___    898 TCTGAGCTTGATGTAATGGCTCCT------GGCGTGTCCATCCAAAGCAC    941
                     .|.||||||||.||.|||||||||      |||||||.||          
BL01111___apr    892 GCAGAGCTTGAAGTCATGGCTCCTGGCGCAGGCGTGTACA----------    931

BSNT_01747___    942 ACTTCCTGGAGGCACTTA------CGGCGCTTAT---------AACGGAA    976
                                |||||||      |.||.|||||         |||||||
BL01111___apr    932 -----------GCACTTACCCAACCAGCACTTATGCAACATTGAACGGAA    970

BSNT_01747___    977 CGTCCATGGCGACTCCTCACGTTGCCGGAGCAGCAGCGCTAATTCTT-TC   1025
                     ||||.|||||..|||||||.||.||.|||||||||||..|.| |||| ||
BL01111___apr    971 CGTCAATGGCTTCTCCTCATGTAGCGGGAGCAGCAGCTTTGA-TCTTGTC   1019

BSNT_01747___   1026 TAAGCACCCGA---------CTTGGACAAACGCGCAAGTCCGTGATCGTT   1066
                     .||.||.||||         |||         |.||||||||..|.|||.
BL01111___apr   1020 AAAACATCCGAACCTTTCAGCTT---------CACAAGTCCGCAACCGTC   1060

BSNT_01747___   1067 TAGAAAGCACTGCAACATATCTTGGAAACTCTTTCTACTATGGAAAAGGG   1116
                     |....||.||.||.||.|||.|.||||.|||.|||||||||||||||||.
BL01111___apr   1061 TCTCCAGTACGGCGACTTATTTGGGAAGCTCCTTCTACTATGGAAAAGGT   1110

BSNT_01747___   1117 TTAATCAACGTACAAGCAGCTGCACAATAA   1146
                     .|.|||||.||..||||.||.||.||||||
BL01111___apr   1111 CTGATCAATGTCGAAGCTGCCGCTCAATAA   1140


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