Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01756 and BL01113

See Amino acid alignment / Visit BSNT_01756 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:15
# Commandline: needle
#    -asequence dna-align/BSNT_01756___yhfR.1.5803.seq
#    -bsequence dna-align/BL01113___yhfR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01756___yhfR-BL01113___yhfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01756___yhfR-BL01113___yhfR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01756___yhfR
# 2: BL01113___yhfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 610
# Identity:     404/610 (66.2%)
# Similarity:   404/610 (66.2%)
# Gaps:          65/610 (10.7%)
# Score: 1215.0
# 
#
#=======================================

BSNT_01756___      1 ATGACAGCCGTTTGTTTAGTAAGACATGGAGAAACCGATTGGAACCTGC-     49
                     |||||.||..|||||||..|..|.||.||.||.||.||.|||||  ||| 
BL01113___yhf      1 ATGACTGCGATTTGTTTGATCCGGCACGGCGAGACGGACTGGAA--TGCT     48

BSNT_01756___     50 --AGCAAAAATGCCAAGGCAA-AACCGATATCCCGCTAAACGCAACAGGT     96
                       ||.||||.|||  |||.|| |||.||||||||..||||.|.|||.|||
BL01113___yhf     49 TTAGGAAAACTGC--AGGGAAGAACAGATATCCCTTTAAATGAAACCGGT     96

BSNT_01756___     97 GAACGCCAAGCAAGAGAAACCGGAGAATATGT-AAAG-----GACTTTTC    140
                     .||...|||||||.|||||||||.|..|.|.| ||||     |||     
BL01113___yhf     97 AAAAAACAAGCAAAAGAAACCGGGGCGTTTTTGAAAGGGTCCGAC-----    141

BSNT_01756___    141 TTGGGATATTATTGTGACGAGCCCGCTGAAAAGAGCGAAAAGAACCGCGG    190
                      |||||..|.||..|.||.|||||..|.|.||||||||||..||||||.|
BL01113___yhf    142 -TGGGACGTCATCATTACAAGCCCTTTAAGAAGAGCGAAAGAAACCGCTG    190

BSNT_01756___    191 AAATTATTAATGAATATCT-GCATCTTCCGATAGTCGAGATGGATGATTT    239
                     ||||.||.|||.||||.|| |.| |||...||..||||.|||||.|||||
BL01113___yhf    191 AAATCATCAATCAATACCTCGGA-CTTGAAATCATCGAAATGGAGGATTT    239

BSNT_01756___    240 TA-----AGGAACGCGATTACGGCGACGCGGAGGGCATGCCGCTGGAGGA    284
                     .|     ||||     |||||||.||.||.||.||.|||||..|.||.||
BL01113___yhf    240 CATCGAGAGGA-----ATTACGGAGATGCAGAAGGAATGCCATTCGAAGA    284

BSNT_01756___    285 ACGGACAAAGCGCTATCCAGATAACATCTATCCGAATATGGAAACCTTAG    334
                     |.|.|..|.||.||||||.|||||....|||||||||..||||.|...||
BL01113___yhf    285 AAGAATGAGGCTCTATCCTGATAAAGAATATCCGAATCAGGAATCAAAAG    334

BSNT_01756___    335 AAGAACTCACTGACAGGCTGATGGGCG--GTTTGGCAAA-----AGTGAA    377
                     |||..||..|.||..|||||||||.||  |||   ||||     ||||| 
BL01113___yhf    335 AAGCGCTTGCCGAACGGCTGATGGCCGGCGTT---CAAAAGGTCAGTGA-    380

BSNT_01756___    378 CCAGGC-GTATCCAAACAAGAAGGTGCTGATCGTGGCGCACGGTGCGGCA    426
                         || ||||||..||||.||.|||||||||||.||.|||||.||.||.
BL01113___yhf    381 ----GCGGTATCCGGACAAAAAAGTGCTGATCGTCGCACACGGAGCCGCG    426

BSNT_01756___    427 ATTCACGCCCTGCTGACAGAAATATCCGGCGGTGACCCGGAGCTTCAAAG    476
                     ||.|||||.||.|||.||.||||.||...|||.|||....|.||..|||.
BL01113___yhf    427 ATACACGCGCTTCTGTCAAAAATCTCAAACGGCGACATCAACCTGGAAAA    476

BSNT_01756___    477 CACCCGTCTCGTCAACGCCTGCCTCAGCAACATTGAATTTGCA-GAAGAA    525
                     |||....||||||||.||||||||.||||||||..||||| || |||.|.
BL01113___yhf    477 CACGAAGCTCGTCAATGCCTGCCTAAGCAACATCAAATTT-CATGAAAAT    525

BSNT_01756___    526 AAATGGCGGATAAAAGACTATAA--TATCAACAGCCACTTATCCGGCTTT    573
                     |||||||...|.||.||.||.||  |.|| ||| |||          |||
BL01113___yhf    526 AAATGGCATGTGAAGGATTACAACCTTTC-ACA-CCA----------TTT    563

BSNT_01756___    574 ATCAAATAA-    582
                     .|||.||.| 
BL01113___yhf    564 GTCAGATTAA    573


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