Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01763 and BL01115
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:15
# Commandline: needle
# -asequence dna-align/BSNT_01763.1.5803.seq
# -bsequence dna-align/BL01115___yhfW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01763-BL01115___yhfW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01763-BL01115___yhfW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01763
# 2: BL01115___yhfW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1583
# Identity: 451/1583 (28.5%)
# Similarity: 451/1583 (28.5%)
# Gaps: 979/1583 (61.8%)
# Score: 1187.5
#
#
#=======================================
BSNT_01763 0 -------------------------------------------------- 0
BL01115___yhf 1 GTGAGCAATCAAGAACAAAAACTGCCGGACTCGCCTGAATCGTATTGGAG 50
BSNT_01763 0 -------------------------------------------------- 0
BL01115___yhf 51 AAACAGTACAGACCTTCCTTCGTTCGAGGAACTGTCTGAAGATGTCAAAA 100
BSNT_01763 0 -------------------------------------------------- 0
BL01115___yhf 101 CAGATGTCGCCATCATCGGCGGCGGCATGACCGGACTGACGACGGCTTAT 150
BSNT_01763 0 -------------------------------------------------- 0
BL01115___yhf 151 TTGCTGACGAAAAAAGGCTACAGCGTCGTCTTGATCGAATCCGGCCGGAT 200
BSNT_01763 0 -------------------------------------------------- 0
BL01115___yhf 201 ACTCGACGGAACAACCGGCTATACGACAGCCAAAATCACCGCGCAGCACG 250
BSNT_01763 0 -------------------------------------------------- 0
BL01115___yhf 251 ATCTGATCTATGACGAACTGATCGGGCATATCGGAATGCCGAATGCGAGG 300
BSNT_01763 1 ------------------------------------------------GT 2
||
BL01115___yhf 301 CTGTATTATGAAGCAAATCTCAAGGCGCTGTCCTTTATCAAAAACCTCGT 350
BSNT_01763 3 GGATGAACATCAAATTGA----ATGCGA--ATGGATCGAGCAAGACGCAT 46
|..|||.|| ||| || .||||| .||.| ||.||.|||||.|
BL01115___yhf 351 GCTTGAGCA--AAA--GATACCGTGCGATTTTGAA--GAACAGGACGCGT 394
BSNT_01763 47 ATCTTTATACGGCAAATGAA-AAC--GCTGTTCAAAAAATCCGCACCGAG 93
...||||.| |||.|||| ||| .|.||.||||||.||.|.|..||.
BL01115___yhf 395 GCATTTACA---CAACTGAAGAACAATCGGTCCAAAAACTCAGAAAGGAA 441
BSNT_01763 94 CATGAGGCATACACAAAGCTCGGAATTGAAAGAGACCTTGTCAAGGATC- 142
.||||.||||||..|||||||||.|||||.||.||..|..||||.||||
BL01115___yhf 442 TATGAAGCATACCAAAAGCTCGGGATTGACAGGGAATTCATCAAAGATCT 491
BSNT_01763 143 -----TTCCAATTCCCTTAGGTTCT--AAGCTGGCGCTTGTCATGAAGAA 185
|.|||||| |.|.| ||||.|| .||.||||||||.||
BL01115___yhf 492 CCCCGTCCCAATT-------GATGTAAAAGCAGG-ACTCGTCATGAAAAA 533
BSNT_01763 186 TCAAGCTCAATTTCATCCGCTGCAATACTTAAAAGCGCTTCTGGAGCAAA 235
.||.||.||.||||||||||||||.||.||.|||...||| |||.|
BL01115___yhf 534 CCAGGCCCAGTTTCATCCGCTGCACTATTTGAAATACCTT-----GCAGA 578
BSNT_01763 236 --TTGTTCAAAAAGGCGGCCG---AATTTATGAGGAGAC--CGTTGCGCT 278
..||.|...|||.||||.| |||.||.||..|.|| ||| ||
BL01115___yhf 579 GGCCGTCCGGGAAGCCGGCGGAAAAATATACGAAAACACGGCGT----CT 624
BSNT_01763 279 --TGATATCAAAAAAGGCGAAAGGCCCGAAGTGGTAACTAAAAGCCGGCA 326
.||.||||||.|||||||..||||..|||||.|.||.|.|||| |.|
BL01115___yhf 625 AAGGAAATCAAAGAAGGCGACCGGCCAAAAGTGCTGACAAGAAGC--GGA 672
BSNT_01763 327 CGCCA----TTAAGAGCCGCTT-TATCATATGCTGTTCCCACTTCCCTTT 371
|..|| ||.|| ||.|| |.|||..|||||..|.|||||.||.||
BL01115___yhf 673 CATCAAATCTTCAG---CGATTATGTCACGTGCTGCACGCACTTTCCATT 719
BSNT_01763 372 TTATGACGGAGGCGGATTATATGCTGCGAGAATGTACT----CCGA-CAG 416
|.||||...|...|||||.|||..|||.|| .|| |||| |.|
BL01115___yhf 720 TCATGATAAAAAAGGATTCTATTTTGCAAG-----GCTTGAGCCGAGCCG 764
BSNT_01763 417 ATCTTATGTCCTTGCCATCAAGCCGAAGATCG-AGTATCCCGAGGGCATG 465
.||.||.||.||.|||.|||||||||| |.|| .||||||.|..||||||
BL01115___yhf 765 GTCATACGTGCTCGCCGTCAAGCCGAA-AACGCCGTATCCAGGCGGCATG 813
BSNT_01763 466 TATTTGAGTATCGATCAGCCGTCAGTGGCGCTC----CGCTATACGGTTG 511
||.||.|||||.||.|||||.||| ||||| |||| ||| ||
BL01115___yhf 814 TACTTAAGTATAGACCAGCCTTCA----CGCTCGCTTCGCT---CGG-TG 855
BSNT_01763 512 ----TAAACGGTGAAAAGCTGATTCTCTTCAGCGGAGTAAGCCATAAAAC 557
|..||||.|||||..||.||||..||.||||.|.||||||.|||||
BL01115___yhf 856 ACGATCGACGGAGAAAAAATGGTTCTTGTCGGCGGTGAAAGCCACAAAAC 905
BSNT_01763 558 AGGGCAGGGAAAAGACATGTCTACA------CATTATGAAACAC-TGAGA 600
.||.||||||.|||| |||| ||||||.|..|.| ||| |
BL01115___yhf 906 CGGCCAGGGAGAAGA------TACAATCAAGCATTATCAGGCGCTTGA-A 948
BSNT_01763 601 CAACTAGCCGAAAGCACCATCGGCATCGAA-------------------- 630
..|.|.||.|||.||....|||||||||||
BL01115___yhf 949 TCATTTGCGGAAGGCGTGCTCGGCATCGAATCGATCCCTTACCGCTGGTC 998
BSNT_01763 631 AGC-------------------------ATTCCATATTATTGGTCC-ACC 654
||| |||||.|| |||.||.|| |.|
BL01115___yhf 999 AGCGCAAGATTTAATCACGCTTGACAAAATTCCGTA-TATCGGGCCGATC 1047
BSNT_01763 655 TAA----------------------------------------------- 657
||.
BL01115___yhf 1048 TATCCGAAAGAAAAGCGCATTCTCGTCGCCACCGGATATCGGAAATGGGG 1097
BSNT_01763 657 -------------------------------------------------- 657
BL01115___yhf 1098 CATGACAACGAGCACCCTCGCCGCGCAGCTGATGACAGATCATATCGCGG 1147
BSNT_01763 657 -------------------------------------------------- 657
BL01115___yhf 1148 GTGAAGACAATCCTTATCAAGCCGTCTTTCAGCCGGCCCGTTTCCACCCG 1197
BSNT_01763 657 -------------------------------------------------- 657
BL01115___yhf 1198 GATCCAAGCATCAAAAAAGCGATTTCCTACAACGCGGATGTTGCAAAACA 1247
BSNT_01763 657 -------------------------------------------------- 657
BL01115___yhf 1248 CTTTGCCGAAGGAAAACTCGAGCAGCCGATCAGGAAGCCGGAAGACCTTG 1297
BSNT_01763 657 -------------------------------------------------- 657
BL01115___yhf 1298 TCAACGGAGAAGGCGCGGTCGTGTCGCATGCCGGGAAACGGGCGGGCGCT 1347
BSNT_01763 657 -------------------------------------------------- 657
BL01115___yhf 1348 TATCGCGATGAAAAAGGCGAGCTTCATCTGGTTGACACAACATGCACCCA 1397
BSNT_01763 657 -------------------------------------------------- 657
BL01115___yhf 1398 TATGGGCTGTGAAGTCGAGTGGAATGATGGAGAAAAGACATGGGACTGTC 1447
BSNT_01763 657 -------------------------------------------------- 657
BL01115___yhf 1448 CGTGCCACGGCTCAAGGTTTTCGATCGACGGCGATGTCATTGAGGGCCCT 1497
BSNT_01763 657 --------------------------------- 657
BL01115___yhf 1498 GCCGTAGAACCTCTTAAAGATCCAGAAAGCTGA 1530
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