Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04004 and BL01124

See Amino acid alignment / Visit BSNT_04004 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:03
# Commandline: needle
#    -asequence dna-align/BSNT_04004___relA.1.5803.seq
#    -bsequence dna-align/BL01124___relA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04004___relA-BL01124___relA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04004___relA-BL01124___relA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04004___relA
# 2: BL01124___relA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2214
# Identity:    1779/2214 (80.4%)
# Similarity:  1779/2214 (80.4%)
# Gaps:          21/2214 ( 0.9%)
# Score: 7086.0
# 
#
#=======================================

BSNT_04004___      1 ATGGCGAACGAACAAGTATTGACTGCCGAGCAAGTTATAGATAAAGCGCG     50
                     ||||||||||||||||||||.||.||.||||||||.||.||.||.|||..
BL01124___rel      1 ATGGCGAACGAACAAGTATTAACCGCTGAGCAAGTCATTGAGAAGGCGAA     50

BSNT_04004___     51 CAGCTATCTATCTGATGAGCATATCGCATTTGTCGAAAAAGCATATCTGT    100
                     .||.||.||.||.|||||.|||.|.||.|||.|..||||.||.||||.||
BL01124___rel     51 AAGTTACCTTTCCGATGAACATGTTGCTTTTATAAAAAAGGCTTATCAGT    100

BSNT_04004___    101 ACGCTGAAGATGCTCATCGCGAGCAATACCGCAAATCGGGCGAGCCATAT    150
                     ||||.|||||.||.||||||||.|||||||||||||||||||||||.|||
BL01124___rel    101 ACGCGGAAGACGCACATCGCGAACAATACCGCAAATCGGGCGAGCCGTAT    150

BSNT_04004___    151 ATTATTCATCCGATTCAGGTTGCGGGGATTCTCGTCGATCTTGAAATGGA    200
                     |||||.||||||||.|||||.|||||.||.|||||||||.|.||||||||
BL01124___rel    151 ATTATCCATCCGATCCAGGTCGCGGGAATCCTCGTCGATTTAGAAATGGA    200

BSNT_04004___    201 CCCTTCCACAATCGCGGGCGGATTTTTGCACGATGTCGTGGAAGATACAG    250
                     |||..|||||||.|||||.||||||.|.||.|||||.||||||||||| |
BL01124___rel    201 CCCCGCCACAATAGCGGGAGGATTTCTCCATGATGTGGTGGAAGATAC-G    249

BSNT_04004___    251 A-TGTGACGCTCGATGACCTGAAAGAAGCATTTTCCGAAGAAGTGGCAAT    299
                     | .||.|||||.||.||..|.||.||||||||...|||||||||.||.||
BL01124___rel    250 AGCGTAACGCTTGAAGATTTAAAGGAAGCATTCAACGAAGAAGTTGCGAT    299

BSNT_04004___    300 GCTTGTAGACGGCGTAACGAAACTCGGCAAAATTAAATATAAATCTCAAG    349
                     ||||||.||||||||.|||||.||.||.|||||||||||||||||.||.|
BL01124___rel    300 GCTTGTCGACGGCGTCACGAAGCTTGGGAAAATTAAATATAAATCACAGG    349

BSNT_04004___    350 AGGAACAGCAGGCGGAAAATCATCGCAAAATGTTTGTCGCTATGGCTCAA    399
                     |.|||||||||||.|||||||||||.|||||||||||.|||||||||||.
BL01124___rel    350 AAGAACAGCAGGCAGAAAATCATCGGAAAATGTTTGTGGCTATGGCTCAG    399

BSNT_04004___    400 GATATCAGGGTCATATTGATCAAGCTGGCGGATCGTCTTCACAATATGCG    449
                     ||.|||.|.|||||.|||||||||||||||||.||.||||||||.|||.|
BL01124___rel    400 GACATCCGCGTCATTTTGATCAAGCTGGCGGACCGCCTTCACAACATGAG    449

BSNT_04004___    450 GACACTGAAACATCTGCCTCAGGAAAAACAGCGGAGAATCTCCAATGAAA    499
                     .||.|||||.||||||||.||||||||.|||||.|||||.||.|||||.|
BL01124___rel    450 AACCCTGAAGCATCTGCCGCAGGAAAAGCAGCGCAGAATTTCAAATGAGA    499

BSNT_04004___    500 CGCTGGAAATTTTTGCTCCTTTGGCGCATCGTCTCGGGATTTCAAAAATT    549
                     ||||.|||||.||||||||..||||.|||||.||.||||||||||||||.
BL01124___rel    500 CGCTTGAAATATTTGCTCCGCTGGCTCATCGCCTTGGGATTTCAAAAATA    549

BSNT_04004___    550 AAGTGGGAATTGGAAGATACGGCGCTCCGTTATTTGAACCCTCAACAATA    599
                     ||||||||..|.||.|||||.||..|.||.|||||.||.||.||.|||||
BL01124___rel    550 AAGTGGGAGCTTGAGGATACCGCTTTACGGTATTTAAATCCGCAGCAATA    599

BSNT_04004___    600 TTACAGAATTGTCAACCTCATGAAGAAGAAACGTGCAGAACGTGAGCTTT    649
                     ||||.|.||.|||||..|.||||||||.||.||.||.|||.|.||..|.|
BL01124___rel    600 TTACCGGATCGTCAATTTGATGAAGAAAAAGCGGGCCGAAAGGGAATTGT    649

BSNT_04004___    650 ATGTTGATGAGGTTGTCAATGAAGTGAAGAAACGTGTCGAAGAAGTAAAT    699
                     |.||.||.|||||.||.||.||||||||.|..||.||||||||.||.|||
BL01124___rel    650 ACGTCGAAGAGGTCGTAAACGAAGTGAAAAGCCGCGTCGAAGAGGTCAAT    699

BSNT_04004___    700 ATCAAGGCTGACTTCTCGGGACGCCCGAAACATATTTACAGCATTTATCG    749
                     ||.||.||.|||||.||.||.||.|||||.||||||||||||||.||..|
BL01124___rel    700 ATTAAAGCGGACTTTTCCGGCCGGCCGAAGCATATTTACAGCATCTACAG    749

BSNT_04004___    750 AAAAATGGTGCTGCAAAATAAGCAATTCAATGAGATTTACGATTTGCTGG    799
                     ||||||||.|.|||||||.|||||||||||.||.||||||||.|||||.|
BL01124___rel    750 AAAAATGGCGATGCAAAACAAGCAATTCAACGAAATTTACGACTTGCTCG    799

BSNT_04004___    800 CTGTCCGTATTCTTGTGAACAGCATAAAGGACTGCTACGCGGTGCTTGGC    849
                     |.|||||.||.||.||.||||||||.|||||||||||||||||..|.|||
BL01124___rel    800 CAGTCCGGATCCTCGTCAACAGCATCAAGGACTGCTACGCGGTTTTAGGC    849

BSNT_04004___    850 ATCATTCACACATGCTGGAAACCGATGCCCGGCAGATTCAAAGATTATAT    899
                     ||||||||.||.||||||||.||||||||.||||||||.|||||.|||||
BL01124___rel    850 ATCATTCATACGTGCTGGAAGCCGATGCCGGGCAGATTTAAAGACTATAT    899

BSNT_04004___    900 CGCAATGCCGAAGCCGAATATGTATCAATCGCTTCATACAACGGTTATTG    949
                     ||||||||||||||||||.|||||.||||||||.||.||.|||||.||.|
BL01124___rel    900 CGCAATGCCGAAGCCGAACATGTACCAATCGCTCCACACCACGGTCATCG    949

BSNT_04004___    950 GGCCTAAAGGCGATCCGCTTGAAGTGCAGATCCGCACCTTTGAAATGCAT    999
                     |.||.||.|||||||||||.|||||.||||||.|.||.||||||||||||
BL01124___rel    950 GTCCGAAGGGCGATCCGCTGGAAGTCCAGATCAGGACGTTTGAAATGCAT    999

BSNT_04004___   1000 GAAATAGCGGAATACGGGGTTGCGGCTCACTGGGCTTATAAAGAAGGAAA   1049
                     |||||.|||||.|||||..|.||.||.|||||||||||.||||||||.||
BL01124___rel   1000 GAAATTGCGGAGTACGGAATCGCTGCCCACTGGGCTTACAAAGAAGGCAA   1049

BSNT_04004___   1050 AGCAGCCAATGAAGGTGCAACCTTTGAGAAAAAGCTTTCTTGGTTCCGTG   1099
                     |...||||||||||.|.|||.||||||.|||||||||||.||||||||.|
BL01124___rel   1050 AAATGCCAATGAAGATTCAAGCTTTGATAAAAAGCTTTCCTGGTTCCGCG   1099

BSNT_04004___   1100 AAATTTTAGAATTTCAAAATGAATCGACAGATGCAGAAGAATTTATGGAA   1149
                     |||||||.||||||||.|||||.||||..|||||.|||||||||||||||
BL01124___rel   1100 AAATTTTGGAATTTCAGAATGAGTCGAGCGATGCCGAAGAATTTATGGAA   1149

BSNT_04004___   1150 TCGCTCAAAATTGATTTGTTCTCTGATATGGTGTATGTCTTTACGCCAAA   1199
                     ||.||.|||||.||||||||.||.||.|||||.|..||.||||||||.||
BL01124___rel   1150 TCTCTTAAAATCGATTTGTTTTCGGACATGGTATTCGTTTTTACGCCGAA   1199

BSNT_04004___   1200 AGGAGATGTAATCGAGCTTCCGTCCGGTTCTGTTCCGATTGATTTTTCTT   1249
                     |||.||.||.|||||..|.|||||.||.||.||.|||||.||.|||||.|
BL01124___rel   1200 AGGGGACGTCATCGAATTGCCGTCAGGATCCGTGCCGATCGACTTTTCGT   1249

BSNT_04004___   1250 ACCGGATTCACTCTGAAATCGGCAATAAAACAATCGGTGCCAAAGTAAAC   1299
                     ||||.||.||.||.|||||.|||||||||||.|||||.||||||||||||
BL01124___rel   1250 ACCGAATCCATTCAGAAATAGGCAATAAAACGATCGGGGCCAAAGTAAAC   1299

BSNT_04004___   1300 GGAAAAATGGTTACGCTTGACCATAAGCTTCGGACAGGTGATATCGTTGA   1349
                     ||.||||||||.||.|||||..|.|||||.||.|||||.||||||||.||
BL01124___rel   1300 GGCAAAATGGTCACCCTTGATTACAAGCTGCGCACAGGGGATATCGTAGA   1349

BSNT_04004___   1350 AATTCTCACCTCTAAGCATTCCTACGGTCCGAGCCAGGATTGGGTGAAGC   1399
                     ||||||.||.||.||||||||.|||||||||||.|||||.|||.|.||.|
BL01124___rel   1350 AATTCTGACGTCCAAGCATTCGTACGGTCCGAGTCAGGACTGGATCAACC   1399

BSNT_04004___   1400 TTGCCCAAACATCCCAAGCGAAGCATAAAATCCGTCAATTCTTTAAGAAA   1449
                     ||||.||.|||||.|||||||||||||||||||||||.||||||||.||.
BL01124___rel   1400 TTGCGCAGACATCTCAAGCGAAGCATAAAATCCGTCAGTTCTTTAAAAAG   1449

BSNT_04004___   1450 CAGCGGCGTGAAGAAAATGTCGAAAAAGGCCGTGAGTTGGTCGAAAAAGA   1499
                     |||||..|.||.||||||||||||||||||.|.||..||||.||||||||
BL01124___rel   1450 CAGCGCAGAGAGGAAAATGTCGAAAAAGGCAGAGAACTGGTTGAAAAAGA   1499

BSNT_04004___   1500 AATTAAAAACCTGGATTTTGAATTGAAGGATGTTTTAAC-GCCGGAGAAT   1548
                     |||||||||||||||.||||||.|||||||.||.||||| ||| ||||||
BL01124___rel   1500 AATTAAAAACCTGGACTTTGAAGTGAAGGACGTCTTAACAGCC-GAGAAT   1548

BSNT_04004___   1549 ATTCAAAAGGTTGCTGACAAATTTAATTTCTCAAATGAAGAGGATATGTA   1598
                     .|.||.|||||.||.||||||||.||.||..|.||||||||.||.|||||
BL01124___rel   1549 CTGCAGAAGGTCGCCGACAAATTCAACTTTGCCAATGAAGAAGACATGTA   1598

BSNT_04004___   1599 CGCGGCGGTCGGTTACAACGGCATTACTG-CTCTGCAGGTGGCGAACCGC   1647
                     .||.||.|||||.||.|||||||||||.| |.|| ||.||.||.||||||
BL01124___rel   1599 TGCCGCTGTCGGCTATAACGGCATTACAGCCGCT-CAAGTTGCAAACCGC   1647

BSNT_04004___   1648 CTAACAGAAAAAGAGAGAAAG--CAGCGCGATCAGGAAGAACAG--GAAA   1693
                     ||.||.||||||||..|.|||  ||  |.|||||||||||||||  ||||
BL01124___rel   1648 CTTACGGAAAAAGAACGGAAGATCA--GAGATCAGGAAGAACAGGTGAAA   1695

BSNT_04004___   1694 AGATCGTTCAGGAAGTTACTGGGGAACCTAAGCCGTACCCGCAA-GGAAG   1742
                     ||  |||||||||.||.||....|||...||.||.|||   ||| |||||
BL01124___rel   1696 AG--CGTTCAGGACGTAACGCCTGAAGTGAAACCTTAC---CAAGGGAAG   1740

BSNT_04004___   1743 AAAACGGGAAGCTGGCGTTCGTGTCAAGGGCATCGACAACCTCCTTG-TC   1791
                      |||||.|||||.||.|||||.|||||.|||.|.|||||||| .||| ||
BL01124___rel   1741 -AAACGCGAAGCGGGTGTTCGCGTCAAAGGCGTTGACAACCT-TTTGATC   1788

BSNT_04004___   1792 CGTTTATCAAAATGCTGCAATCCTGTGCCAGGTGATGATATTGTCGGCTT   1841
                     .|..|.||||||||||||||.|||||.||.||.|||...||.|||||.||
BL01124___rel   1789 AGGCTGTCAAAATGCTGCAACCCTGTTCCGGGAGATCCGATCGTCGGATT   1838

BSNT_04004___   1842 TATCACAAAAGGCAGAGGGGTTTCGGTCCATCGCGAAGACTGTCCGAATG   1891
                     .||.|||||||||||.||.||.||.|||||||||||.|||||.|||||||
BL01124___rel   1839 CATTACAAAAGGCAGGGGCGTATCCGTCCATCGCGAGGACTGCCCGAATG   1888

BSNT_04004___   1892 TCAAAACGAATGAAGCCCAAGAGCGGCTGATCCCGGTAGAGTGGGAGCAT   1941
                     |...|||.||||||||.|..||.|||||.||.|..|||||.|||||||||
BL01124___rel   1889 TTTTAACAAATGAAGCGCTCGACCGGCTCATTCAAGTAGAATGGGAGCAT   1938

BSNT_04004___   1942 GAGTCACAGGTTCAAAAGCGCAAGGAATACAATGTTGAGATAGAGATTCT   1991
                     ||..|.|||...||...|.|.||.|||||.||.||.||.||.||||||||
BL01124___rel   1939 GAACCGCAGACCCAGCGGAGAAAAGAATATAACGTCGAAATTGAGATTCT   1988

BSNT_04004___   1992 TGGGTATGACCGCCGCGGATTGCTGAACGAGGTGCTGCAGGCAGTGAATG   2041
                     .||.||||||||||||||..|.||.||.||.||.||.||||||||.||||
BL01124___rel   1989 CGGCTATGACCGCCGCGGTCTTCTTAATGAAGTTCTACAGGCAGTTAATG   2038

BSNT_04004___   2042 AAACGAAAACAAATATTTCATCTGTCTCTGGCAAATCGGATCGCAATAAA   2091
                     |.||.||||||||||||||||||||.||.||.||||||||.|||||||||
BL01124___rel   2039 AGACAAAAACAAATATTTCATCTGTTTCAGGTAAATCGGACCGCAATAAA   2088

BSNT_04004___   2092 GTGGCAACCATTCATATGGCGATTTTTATTCAGAATATCAATCACTTGCA   2141
                     |||||.||.||.|||||||||||.||.|||||.|||||.||.||.|||||
BL01124___rel   2089 GTGGCGACGATCCATATGGCGATCTTCATTCAAAATATTAACCATTTGCA   2138

BSNT_04004___   2142 CAAAGTCGTCGAGCGTATTAAACAGATTAGAGATATCTACTCTGTGCGCC   2191
                     .|||||.||.||.||.|||||.|||||.|.||||||.|||||.||||||.
BL01124___rel   2139 TAAAGTAGTTGAACGGATTAAGCAGATCAAAGATATTTACTCCGTGCGCA   2188

BSNT_04004___   2192 GCGTCATGAACTAA   2205
                     |.||.|||||.||.
BL01124___rel   2189 GGGTGATGAATTAG   2202


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