Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04007 and BL01127

See Amino acid alignment / Visit BSNT_04007 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:03
# Commandline: needle
#    -asequence dna-align/BSNT_04007___yrvE.1.5803.seq
#    -bsequence dna-align/BL01127___recJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04007___yrvE-BL01127___recJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04007___yrvE-BL01127___recJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04007___yrvE
# 2: BL01127___recJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2477
# Identity:    1696/2477 (68.5%)
# Similarity:  1696/2477 (68.5%)
# Gaps:         244/2477 ( 9.9%)
# Score: 5569.5
# 
#
#=======================================

BSNT_04007___      1 ATGTTAGCGTCAAAAATGCGATGGGAAAT-CCAGCGACCAGATCAGGATA     49
                     ||||||||||||||||||||.|||||..| |.|.|| ||.||..|.||.|
BL01127___rec      1 ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACG-CCCGACAAAGAAA     49

BSNT_04007___     50 AGGT----CAAATCACTCACAGAACAATT--GCATATAACACCTCTTGTT     93
                     ||||    ||    .|||.|.|.|...||  ||  ||.||.||.||||..
BL01127___rec     50 AGGTGGAGCA----GCTCGCCGGAAGGTTAGGC--ATTACTCCCCTTGCC     93

BSNT_04007___     94 GCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGC--AGAAAGC-GCT--    138
                     ||.||..|||||||.|..|||||.|..|||||.||  |.||||| .||  
BL01127___rec     94 GCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTC    143

BSNT_04007___    139 AGGCTGTTTTTACATACAAAGGATGC-CGATTTTTATGATCCTTTTGAAA    187
                     |     ||||||.||...||.||||| || ||||.|.|||||||.|....
BL01127___rec    144 A-----TTTTTATATGGCAATGATGCACG-TTTTCACGATCCTTATCTGC    187

BSNT_04007___    188 TGAAAGGCATGAAAGAAGCGGCAGATCGAATAAAACAGGCGATTTCACAA    237
                     ||||||..|||.||.||||.|.|...|||||.||||||||.||||||.|.
BL01127___rec    188 TGAAAGATATGGAAAAAGCTGTACGGCGAATCAAACAGGCAATTTCAGAT    237

BSNT_04007___    238 CAAGAAAAGATTATGATATATGGCGATTATGACGCCGATGGGGTTACAAG    287
                     |||||||||||||||||.||.|||||||||||.||.||.||.||.|||||
BL01127___rec    238 CAAGAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAG    287

BSNT_04007___    288 TACGTCAGTAATGCTTCACACGCTGCAAAAACTG-TCGGCTCAAGTTGAT    336
                     .|||.|.||..|..|.||.|.|.|| |||||.|| ||.||.||||..|||
BL01127___rec    288 CACGACTGTCCTTTTGCAAATGTTG-AAAAAATGTTCAGCACAAGCCGAT    336

BSNT_04007___    337 TTTTATATACCTGACCGTTTTAAAGAAGGATATGGACCTAATGAACAGGC    386
                     |||||||||||||||||.|||||||||||.||.||.||.||||||..|||
BL01127___rec    337 TTTTATATACCTGACCGCTTTAAAGAAGGGTACGGTCCGAATGAAGCGGC    386

BSNT_04007___    387 GTTTCGTTCGATTAAAG-ATCGGGGCTTCTCTTTGATCATTACGGTTGAT    435
                     .|||||...|||.|||| ||| .||||..||.|||||||||||.|||||.
BL01127___rec    387 CTTTCGCGGGATCAAAGAATC-AGGCTATTCATTGATCATTACAGTTGAC    435

BSNT_04007___    436 ACAGGAATTGCCGCTGTGCATGAAGC-GAAGGTGGCAAAGGAACTCGGAC    484
                     |||||.|||||||..||.|||||||| ||| ||.||.||.||.|||||..
BL01127___rec    436 ACAGGCATTGCCGGCGTTCATGAAGCTGAA-GTCGCTAAAGAGCTCGGCA    484

BSNT_04007___    485 TGGATGTCATCATTACTGATCATCATGAACCGGGACCGGAGCTTCCGGAT    534
                     |.||..|.||||||||.|||||.|||||.|||||.||.|...|.||||||
BL01127___rec    485 TCGACCTGATCATTACGGATCACCATGAGCCGGGTCCCGTTTTGCCGGAT    534

BSNT_04007___    535 GTCCATGCGATCGTCCACCCGAAGCAGCCTGGCTGCACTTACCCGTTTAA    584
                     |...||||||||.|.||.|||||.|||||.||||||...||.||.|||||
BL01127___rec    535 GCTTATGCGATCATTCATCCGAAACAGCCGGGCTGCGGCTATCCATTTAA    584

BSNT_04007___    585 AGAGCTTGCCGGGGTTGGAGTCGCGTTTAAGCTTGCCCACGCTTTATTGG    634
                     ||||||||||||.||.||.||.||.||||||||||||||.||.||....|
BL01127___rec    585 AGAGCTTGCCGGCGTCGGTGTGGCATTTAAGCTTGCCCATGCCTTGAACG    634

BSNT_04007___    635 GTGAACTTCCTGATGAACTGCTTGACCTGGCGGCTATCGGCACCATTGCC    684
                     |.||.|||||.||.||..||||.|||||....||.|||||.||.||||||
BL01127___rec    635 GAGAGCTTCCGGAAGATTTGCTCGACCTTTGTGCGATCGGTACGATTGCC    684

BSNT_04007___    685 GATCTAGTCCCGCTGCATGACGAAAACAGATTAATTGCAACACTAGGACT    734
                     |||||.||.|||||.|||||.||||||||....||.||.|..|..||..|
BL01127___rec    685 GATCTTGTGCCGCTTCATGATGAAAACAGGCAGATAGCCAAGCGCGGCAT    734

BSNT_04007___    735 TGAA-AGGCTTCGACGG---ACAAATCGGCTCGGCTTAAAAGAGCTG---    777
                     .||| ||  |||  .||   ||.||.||.|..||.|||||||.||||   
BL01127___rec    735 GGAACAG--TTC--AGGAAAACGAAGCGTCCAGGATTAAAAGCGCTGGCG    780

BSNT_04007___    778 ---ATTAAGCTGTCAGGCGGAGACATCGGAG-------AAGCGAACGAAG    817
                        |||         |.|||||    |||||       |.|||.|.||||
BL01127___rec    781 AAAATT---------GCCGGAG----CGGAGATACATAACGCGGATGAAG    817

BSNT_04007___    818 AAACAGTCGGATTTCAGCTCGCACCAAGGCTGAATGCCGTCGGAAGAATC    867
                     |.||..||||.|||||..||||.||..|..|.||.||.|||||.|||||.
BL01127___rec    818 AGACCATCGGTTTTCAAATCGCGCCCCGCTTAAACGCGGTCGGCAGAATT    867

BSNT_04007___    868 GAACAGGCGGATCCCGCTGTTCATTTGCTTATGTCAGAGGATTCG--TTT    915
                     ||||||||.||.||.||.|||.|..|.||.|...||||.||  ||  ...
BL01127___rec    868 GAACAGGCTGACCCGGCCGTTTACCTCCTGAACACAGAAGA--CGAAAGA    915

BSNT_04007___    916 GAAGCGGAAGAGCTTGCCGCAGAAATTGACCAGC--TGAACAAAGAGCGC    963
                     |||||||||||||||||.|..||.||..||  ||  |||||||.||||||
BL01127___rec    916 GAAGCGGAAGAGCTTGCTGAGGACATCAAC--GCCTTGAACAAGGAGCGC    963

BSNT_04007___    964 CAAAAAATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACA   1013
                     ||||||||.||||...|.|||||.||.|||||..||.|.|||.|.||..|
BL01127___rec    964 CAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGA   1013

BSNT_04007___   1014 GCAAGGGCTCGATCAAACTGCAATTGTCGT-----GGCCAAAGCCGGATG   1058
                     |.||||.||.||.||..|||..||.|||||     |||     |.||.||
BL01127___rec   1014 GGAAGGCCTTGACCAGCCTGTGATCGTCGTAGCGCGGC-----CGGGCTG   1058

BSNT_04007___   1059 GAACCCGGGAGTCGTCGGGATTGTGGCTTCAAAGCTTGTGGACCGCTTCT   1108
                     |||.||.||.|||||.||.||.|||||||||||||||||.||.||.||.|
BL01127___rec   1059 GAATCCTGGCGTCGTGGGAATCGTGGCTTCAAAGCTTGTCGAGCGGTTTT   1108

BSNT_04007___   1109 ACCGACCGGCCATTGTTCTTGGCATTGATGAAGAAAAGGGAATCGCTAAA   1158
                     ||.|.||.|||||.||.||||||.|.|||||||||||.|||||.||.|||
BL01127___rec   1109 ACAGGCCCGCCATCGTCCTTGGCGTCGATGAAGAAAAAGGAATTGCCAAA   1158

BSNT_04007___   1159 GGTTCGGCCCGAAGCATCAGAGGCTTTAATTTATTTGAGAGCCTTTCTGA   1208
                     ||.||.||.||.|||||||.|||.|||.||||||||.|.|.||||||.||
BL01127___rec   1159 GGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAACCTTTCCGA   1208

BSNT_04007___   1209 ATGCAGAGATATTCTTCCTCATTTCGGCGGCCATCCAATGGCTGCGGGGA   1258
                     .|||.|.||||||||.||.||.|||||||||||.||.|||||.||.||.|
BL01127___rec   1209 GTGCCGGGATATTCTCCCGCACTTCGGCGGCCACCCGATGGCAGCCGGAA   1258

BSNT_04007___   1259 TGACGCTGAAAGCT-GAAGATGTGCCGGATTTGCG----------AA---   1294
                     ||||||| .||.|| |||||.||..|||.|.||.|          ||   
BL01127___rec   1259 TGACGCT-CAACCTGGAAGACGTTTCGGCTCTGAGGGAGAGAATCAACCG   1307

BSNT_04007___   1295 GCAGGCTGAACGAAATAGCGGACAATACGCTTACGGAAGAGGATTTTATT   1344
                     .||||||||       |||||      ..||.||.||.|..||||||||.
BL01127___rec   1308 TCAGGCTGA-------AGCGG------TTCTGACCGAGGCAGATTTTATC   1344

BSNT_04007___   1345 CCCGTACAGGAAGTCGACCTTGT-CTGCAGCATCGAGGACATTACAGTTG   1393
                     |||||.||.||.||||| .|||| ||||.|..||||.||.||..|.||||
BL01127___rec   1345 CCCGTCCAAGACGTCGA-TTTGTGCTGCCGGCTCGAAGATATATCGGTTG   1393

BSNT_04007___   1394 AAAGCATCGCAGAAATGAACATGCTGTCTCCTTTTGGCATGCTTAACCCG   1443
                     |.|||||.||.|||||||||.|||||.|.||.||.||||.|...||||||
BL01127___rec   1394 ACAGCATTGCCGAAATGAACTTGCTGGCGCCGTTCGGCACGGGAAACCCG   1443

BSNT_04007___   1444 AAACCGCACGTTCT---------CGTAGAAAACGCAGTACTGGAAGATGT   1484
                     ||.|||..||||||         ||||.|||         |.||.||.|.
BL01127___rec   1444 AAGCCGTTCGTTCTTGTCAGCGACGTAAAAA---------TTGATGACGC   1484

BSNT_04007___   1485 CCGCAAGATAGGGGCAAATAAAACTCATGTCAAAAT----------GACG   1524
                     |.|.||.||.||.||.||.||.|.||||.|.||..|          ||||
BL01127___rec   1485 CAGAAAAATCGGCGCCAACAAGAATCATTTGAAGCTTGTGCTTGCAGACG   1534

BSNT_04007___   1525 ATCAGAAACGAGTCGTCCCAGCTTGATTGCGTCGGTTTTAATAAAGGCGA   1574
                     |...|||          |.||||.||||||.||||.|||.||||||||||
BL01127___rec   1535 ACGGGAA----------CAAGCTCGATTGCATCGGATTTTATAAAGGCGA   1574

BSNT_04007___   1575 GCTTCAAGAAGGCATCGTACCGGGTTCAAGAATTTCCATTGTCGGTGAGA   1624
                     ..|..|||||||.|||||.||.||..|||..||.||.||||||||.||..
BL01127___rec   1575 TATCGAAGAAGGAATCGTTCCTGGAGCAAAGATCTCGATTGTCGGGGAAC   1624

BSNT_04007___   1625 TGTCAATCAACGAATGGAACAATCGAAAAAAGCCGCAGCTTATGATAAAG   1674
                     ||||.||.|||||||||||.||..|||||||.||||||||.|||||.||.
BL01127___rec   1625 TGTCGATTAACGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAA   1674

BSNT_04007___   1675 GATGCCGCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGAC   1724
                     |||||.||.||...|||||||||||||||||||.|..|||||||||||.|
BL01127___rec   1675 GATGCGGCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTC   1724

BSNT_04007___   1725 GTGGGAAGACACAGTTT----------CCGCCCTTCCATCTGCTAAACGG   1764
                     .||||||||.|.|.|.|          ||          ||||.||||||
BL01127___rec   1725 ATGGGAAGAAAAAATATTGAAGCTGGACC----------CTGCGAAACGG   1764

BSNT_04007___   1765 GC---CATTGTCTCTTTCAAAGAAGACTCAACAACATTACTTCAAA-CTG   1810
                     ||   ||   |||..|||...||.||   |||||.|     .|||| |||
BL01127___rec   1765 GCGTGCA---TCTGCTTCCGCGAGGA---AACAAAA-----GCAAAGCTG   1803

BSNT_04007___   1811 -------AAGACCTTCGCCG-AGAAG---TGCACGTCATCA---GTTCTA   1846
                            .||.||||    | |||||   ||..||||||||   |..||.
BL01127___rec   1804 GCAGGGACAGGCCTT----GAAGAAGAGCTGACCGTCATCAGCGGCCCTG   1849

BSNT_04007___   1847 AAGATCAAGCAAAGGCGTTTGACCTCGATGGTGC--ATATATTGTATTAC   1894
                     |||||   |||.||..|.|.|||||.||  |.||  .|||...|||||..
BL01127___rec   1850 AAGAT---GCAGAGCGGCTCGACCTTGA--GAGCCGTTATGCGGTATTTA   1894

BSNT_04007___   1895 TGGATCCGCCGCCTTCGCTGGACATGCTCGCACGTTTACTGGAAGGCAAG   1944
                     |.|||...||||..|||||.|||||..|.|..|.|.||.|..|.|||||.
BL01127___rec   1895 TAGATATTCCGCAGTCGCTCGACATCTTTGATCATGTAATAAACGGCAAA   1944

BSNT_04007___   1945 GCGCCTGAGCGGATATATTTTA-TTTTTCTCAATCATGAGGACCACTTTT   1993
                     ..||..|||||.||.|||.|.| |||||.||||||| ||.||.||.||||
BL01127___rec   1945 AAGCTGGAGCGCATTTATCTGATTTTTTATCAATCA-GACGAACATTTTT   1993

BSNT_04007___   1994 TATCAACTTTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTG   2043
                     |.|||||.||.||..||||.||..|.|||||||||||.|||||.|||.|.
BL01127___rec   1994 TCTCAACATTCCCAACAAGGGAATATTTTAAATGGTACTATGCTTTCCTC   2043

BSNT_04007___   2044 CTGAAAAGAGGCGCTTTTGACGTGAAAAAACACGGTTCAGAGCTTGCAAA   2093
                     |||||||||||..||||||||.||...|||.||||...|||||||||.|.
BL01127___rec   2044 CTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCGGAGAGCTTGCCAG   2093

BSNT_04007___   2094 ACATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTT   2143
                     |||||||||||||.|....||.|||||..||||.||||||||||||||||
BL01127___rec   2094 ACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTT   2143

BSNT_04007___   2144 TTGATCTCGGTTTTGTTAAAATAGAGAATGGTGTGCTGTCTGTTGT----   2189
                     ||||.|||||||||||||.|||||||||||||||..|.||||||||    
BL01127___rec   2144 TTGAGCTCGGTTTTGTTACAATAGAGAATGGTGTTTTATCTGTTGTTTAT   2193

BSNT_04007___   2190 -GAGCGGAGCAAAGAAACGCGACTTAACAGACTCACAAACATATCAGGCG   2238
                      ..||.||  ||||   |||||.||||||||.||..||||.||.|.||..
BL01127___rec   2194 CATGCCGA--AAAG---CGCGATTTAACAGATTCTGAAACCTACCGGGAA   2238

BSNT_04007___   2239 AAACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGA   2288
                     |||||||..|||||.|||.||||.||||||||.|.|||||||||.||.||
BL01127___rec   2239 AAACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGA   2288

BSNT_04007___   2289 AGAGCTGAAGGAATGGCTGAATAAGCTGAT----GAAACAAGATTCAGAG   2334
                     .|||||.||..|.||||||.||||||.|||    |||| |||   |.|..
BL01127___rec   2289 TGAGCTTAAACAGTGGCTGGATAAGCGGATGGCGGAAA-AAG---CCGGC   2334

BSNT_04007___   2335 GCTTATGAAAGTACGAGGAGGACATAA   2361
                     |||||| ||||||.||           
BL01127___rec   2335 GCTTAT-AAAGTATGA-----------   2349


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