Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04008 and BL01130

See Amino acid alignment / Visit BSNT_04008 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:03
# Commandline: needle
#    -asequence dna-align/BSNT_04008___yrvD.1.5803.seq
#    -bsequence dna-align/BL01130___yrvD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04008___yrvD-BL01130___yrvD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04008___yrvD-BL01130___yrvD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04008___yrvD
# 2: BL01130___yrvD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 346
# Identity:     218/346 (63.0%)
# Similarity:   218/346 (63.0%)
# Gaps:          74/346 (21.4%)
# Score: 656.5
# 
#
#=======================================

BSNT_04008___      1 ATGAATAAACAATGGACCATTATTTTC-GCACTTATTTTCACCTTAATTG     49
                     |||||.|||||||||| |.|||.||.| |||||||||||.||.|||||||
BL01130___yrv      1 ATGAACAAACAATGGA-CGTTAATTGCTGCACTTATTTTTACATTAATTG     49

BSNT_04008___     50 TCGCTATTTTCGCAGTCATTAATGTTCGATCCGTAGAA-GTTGATTACCT     98
                     |.|||.|||||||.|||||||||||| ||.|||..||| |||||||..||
BL01130___yrv     50 TTGCTGTTTTCGCGGTCATTAATGTT-GAACCGGTGAAGGTTGATTTTCT     98

BSNT_04008___     99 GTTTGGAAGATCAGAATGGCCGCTCATTCTTGTTATTTTGGGCTCAGTTT    148
                     .|||||.|.|.||||||||||..|.||.||.||.|||||||..||.||.|
BL01130___yrv     99 TTTTGGTACAGCAGAATGGCCTTTGATCCTGGTGATTTTGGTGTCGGTAT    148

BSNT_04008___    149 TAATGGGAGCGCTGATCGTATTTTCTGTCGGCATTTTTCAGGTAATGAAA    198
                     |.|||||.|||||.|||.|....||.|.||||..|||.|||.|.||    
BL01130___yrv    149 TGATGGGGGCGCTTATCATCGGCTCGGCCGGCGCTTTCCAGATCAT----    194

BSNT_04008___    199 TTGAAGCGG--GAAATAAAAACCT---TGCG-----GAAAGAAAATAGAA    238
                          ||||  |||| |||.|.||   .|||     ||||||    ||||
BL01130___yrv    195 -----GCGGCTGAAA-AAAGAGCTCAAGGCGCTCAAGAAAGA----AGAA    234

BSNT_04008___    239 C-AGCAATACATAAACAAGAGGATACTCATCTTGCTGATCAGACT----G    283
                     | .||||            ||      ||||   ||||    |||    |
BL01130___yrv    235 CGGGCAA------------AG------CATC---CTGA----ACTCGAAG    259

BSNT_04008___    284 ACACACAGGATGCATCAGCCATGATTGAGAAA-----AAAGACTAG    324
                     .|..||.||..||    |||       .||||     |||||||||
BL01130___yrv    260 CCGAACCGGCGGC----GCC-------CGAAAACCAGAAAGACTAG    294


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