Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04014 and BL01133
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:04
# Commandline: needle
# -asequence dna-align/BSNT_04014___spoVB.1.5803.seq
# -bsequence dna-align/BL01133___spoVB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04014___spoVB-BL01133___spoVB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04014___spoVB-BL01133___spoVB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04014___spoVB
# 2: BL01133___spoVB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1626
# Identity: 1140/1626 (70.1%)
# Similarity: 1140/1626 (70.1%)
# Gaps: 141/1626 ( 8.7%)
# Score: 3946.0
#
#
#=======================================
BSNT_04014___ 1 ATGGCGAAACAGACGTTTTTAAAGGGCACTCTTATCCTTATCGCAGCAGG 50
|||.||||.||||||||||||||.||.||.||.||..|.||.||.||.||
BL01133___spo 1 ATGACGAAGCAGACGTTTTTAAAAGGAACGCTCATTTTAATAGCGGCGGG 50
BSNT_04014___ 51 AATGGTTACAAGAATGCTCGGGTTTGTCAACCGGGTGGTTATCGCCCGTT 100
..||.||||.|||||||||||.|||.||||||||.|.||.|||||..|.|
BL01133___spo 51 TTTGATTACGAGAATGCTCGGCTTTATCAACCGGATTGTCATCGCAAGGT 100
BSNT_04014___ 101 TTATCGGTGAAGAAGGAGTCGGGCTTTACATGATGGCAGCGCCTACCTTC 150
|.|||||||..|||||.||||||||||||||||||||.||.||.||.||.
BL01133___spo 101 TCATCGGTGGTGAAGGCGTCGGGCTTTACATGATGGCGGCCCCGACTTTT 150
BSNT_04014___ 151 TTCTTGGCCACTACATTAACTCAATTCGGTCTGCCGGTCGCGATCAGCAA 200
||..|||||...||..|.||.||.|||||.||.||||||||.||||||||
BL01133___spo 151 TTTCTGGCCGTCACCCTCACCCAGTTCGGCCTCCCGGTCGCCATCAGCAA 200
BSNT_04014___ 201 GCTAGTCGCTGAAGCCAGTGCGCGCGGAGATCATCAAAAAACGAAAAATA 250
|||.|||||||||||....||||||.||||.|||...||.||.|||.|.|
BL01133___spo 201 GCTGGTCGCTGAAGCGGAAGCGCGCCGAGACCATAGGAAGACAAAACAGA 250
BSNT_04014___ 251 TTTTAGTCATGTCTCTGACCATCA-CGGGAGTGCTCAGCCTCATCTTTAC 299
|||||||.||||||||..|.|||| ||||| .|||||||..||||.|.||
BL01133___spo 251 TTTTAGTGATGTCTCTTGCGATCACCGGGA-CGCTCAGCGCCATCATCAC 299
BSNT_04014___ 300 ACCGCTGTTTCTGTTTTTCGCCCCGGTTATGGCTGAAACGATGCTGACAG 349
.|||.|||||||..|||.|||||||.|.|||||.||.|||.||||.||||
BL01133___spo 300 TCCGGTGTTTCTCATTTACGCCCCGCTGATGGCCGATACGCTGCTCACAG 349
BSNT_04014___ 350 ATAAGCGAACACTGTATCCGCTCTTGGCCATTACGCCGGTTGTGCCGATT 399
|.||..||||.||.||||||||.|||||..||||||||||.||||||||.
BL01133___spo 350 ACAAAAGAACGCTTTATCCGCTTTTGGCGGTTACGCCGGTCGTGCCGATC 399
BSNT_04014___ 400 ATTGCTATATCGAGTGTGCTGAGGGGATACTTTCAAGGAAAACAGAATAT 449
|||||..|.||.||.|||||||||||.||.||||||||.||.||.|||||
BL01133___spo 400 ATTGCCGTTTCCAGCGTGCTGAGGGGCTATTTTCAAGGGAAGCAAAATAT 449
BSNT_04014___ 450 GAACCCGCTTGCTATGTCACAAGTCCTTGAACAGGTCGTCCGCATTTCAC 499
|...||||||||..||||.||.||.||.|||||..|.|||||.||.||.|
BL01133___spo 450 GCGGCCGCTTGCCGTGTCCCAGGTTCTCGAACAAATTGTCCGGATATCGC 499
BSNT_04014___ 500 TCGTGGCTGTCTGCACAACGATTTTTCTCCCTTACGGAATTGAATATGCT 549
||||.||.||||||||.||....||.||.||...|||.||.||.|||||.
BL01133___spo 500 TCGTCGCCGTCTGCACGACAGCATTCCTTCCGCTCGGCATCGAGTATGCA 549
BSNT_04014___ 550 GCAGCGGGGGCAATGCTATCCTCAGTGGCAGGGGAGCTGGCATCACTTCT 599
||||||||.||.|||||.||.||.|||...||.||..||||.|||||.||
BL01133___spo 550 GCAGCGGGCGCCATGCTGTCTTCCGTGTTTGGCGAATTGGCTTCACTCCT 599
BSNT_04014___ 600 TTATTTATTCGTTTGCTTTAAGTATAAAAAGACAATTAAAATCAGAAAGC 649
||||||.|||||...||||||.||.|||||||.|||....||||||||.|
BL01133___spo 600 TTATTTGTTCGTCGCCTTTAAATACAAAAAGAAAATCCGCATCAGAAAAC 649
BSNT_04014___ 650 ATTTTTTCCAGTCAATTAAA--------AACGGAAAACAAACCTTTACCC 691
.|||||||||.||..||||| |||| ||.|||..|.
BL01133___spo 650 GTTTTTTCCAATCGCTTAAAGCGGGGCGAACG--------ACTTTTTTCG 691
BSNT_04014___ 692 AATTAATGAGCGTGTCCCTTCCAACAACCGGGAGCCGCTTTATCGGAAAC 741
|..|.||||||||.||.||.|||||.||.||.|||||.||||||||.|||
BL01133___spo 692 AGCTGATGAGCGTCTCGCTCCCAACGACGGGCAGCCGTTTTATCGGGAAC 741
BSNT_04014___ 742 CTCTCTTGGTTTTTCGAGCCAATCGTCGTCGCTCAAAGCCTTGCCATCGC 791
||.||.||||||||.|||||.||.|||||.||.|||||||||||.||.||
BL01133___spo 742 CTGTCATGGTTTTTTGAGCCGATTGTCGTAGCGCAAAGCCTTGCGATAGC 791
BSNT_04014___ 792 CGGTGTGGCAACAGTT--GCCGCAACAAAGCAATACGGGGAACTGACCGG 839
.||.||.|| |..|| ||||||||.|..||.||||||||..|||||||
BL01133___spo 792 AGGGGTCGC--CGCTTCCGCCGCAACGAGCCAGTACGGGGAGTTGACCGG 839
BSNT_04014___ 840 CTTTGCCATGACGCTGCTGACTCTGCCCAGCTTTATTACATATTCTTTGT 889
|||||||.|||||||.||.||.||.||.||||||||.||||||||..|||
BL01133___spo 840 CTTTGCCCTGACGCTTCTCACCCTCCCGAGCTTTATCACATATTCGCTGT 889
BSNT_04014___ 890 CGACCGCGCTTGTTCCTGCGATCAGTGAAGGAATGGAGCAGAAAAAATTG 939
|.||||||||.|||||.||.|||||.||||||||.||||||||||||.||
BL01133___spo 890 CTACCGCGCTCGTTCCCGCCATCAGCGAAGGAATCGAGCAGAAAAAAATG 939
BSNT_04014___ 940 CAGGTGGTGGAATAC-CGCTTGGAACAGGCGATGCGTCTCTGTCTGCTCA 988
|||||.||||||||| .|||| ||.|||||||||.|.||.||.||..|.|
BL01133___spo 940 CAGGTTGTGGAATACAGGCTT-GAGCAGGCGATGAGGCTTTGCCTATTAA 988
BSNT_04014___ 989 GCGGAGGCATTTCAGTTGTTATTTTATTT--GTATTTGCGGATGAGCTGA 1036
||||.||.||.||||..||.||||||||| ||| |||.|||||||||.
BL01133___spo 989 GCGGCGGAATATCAGCGGTCATTTTATTTTCGTA--TGCTGATGAGCTGG 1036
BSNT_04014___ 1037 TGAGAGTGATGTACGGTTCTTCAGGCGCAGCTGTATTTA--TAAAAGTGA 1084
|.||.|||||||||||.||.|||...||.|| .||||| |.|||.|.|
BL01133___spo 1037 TCAGCGTGATGTACGGGTCGTCAAATGCCGC--CATTTACGTCAAAATCA 1084
BSNT_04014___ 1085 TGGCCCCGTTTTTTCTGCTTTATTATTTTCAAGGCCCGCTTCAAGCTGTG 1134
||||.||.||.|||.||.|.||.|||||.||||||||.||.||.||.||.
BL01133___spo 1085 TGGCTCCATTCTTTTTGTTCTACTATTTCCAAGGCCCCCTGCAGGCCGTC 1134
BSNT_04014___ 1135 CTGCAGGCGCTTAATTTGGCAGGAGCTGCGATGATGAACAGCTTAATCGG 1184
||||||||..|.||..||||.||.||.||.||||||||||||||..||||
BL01133___spo 1135 CTGCAGGCTTTAAACCTGGCCGGCGCGGCAATGATGAACAGCTTGGTCGG 1184
BSNT_04014___ 1185 AGCGCTAGTCAAAACAGGCCTTATTTTTGTCCTTGCCACAAGGCCTTCTC 1234
.||..|.||.|||||.||.||.||||||||.||.||..||.|||||||.|
BL01133___spo 1185 CGCCGTTGTGAAAACCGGTCTCATTTTTGTTCTCGCTTCACGGCCTTCGC 1234
BSNT_04014___ 1235 TTGGCATTATGGGCGCGGCATTAGCCATTGTGACAGGCATGGTGCTCGTC 1284
|||||||||||||.||.||..|.||.||..||||.||.||..|.||.|||
BL01133___spo 1235 TTGGCATTATGGGGGCTGCGCTTGCGATCTTGACGGGAATCATCCTTGTC 1284
BSNT_04014___ 1285 ACGCTATTGCACGCAGCAACCGTAAGCAAAGTGCTGCCGATCAGCATCAA 1334
||..|..|||||||.||||||||.|||||||||||.||.||||||||.||
BL01133___spo 1285 ACTTTGCTGCACGCTGCAACCGTCAGCAAAGTGCTTCCCATCAGCATTAA 1334
BSNT_04014___ 1335 AATCAAGGA-------GTACGCGCTCAGCTTCGCTGTTATTGTAATTTGC 1377
..|.||.|| ||| || |||||..||.|||.|.||
BL01133___spo 1335 CCTGAAAGAATATATCGTA-----TC--CTTCGGCGTCATTTTGAT---- 1373
BSNT_04014___ 1378 GGATTCATCA-----GCTCCGCCATCAAACATTATATAAG-----CTTTG 1417
|||| |..|.|||.|| |.||..||| ||||
BL01133___spo 1374 ------ATCAGGGTGGGGCAGCCTTC-----TGATGAAAGAACACCTTT- 1411
BSNT_04014___ 1418 GAGCATCTGAGGCTGTCAAT-CTAGCCGGATGGATTGCGGTGAGCGCCGC 1466
|.|.||.| ||.| |.|||| ||| |||||..
BL01133___spo 1412 -----TTTTAGCC---CAGTCCGAGCC-----GAT--------GCGCCTG 1440
BSNT_04014___ 1467 CATTTATATGATC---------------CTCCTGCT-CGTTTTCCGTTTA 1500
|.|||||.| ||| || || ||||||||.|.|.
BL01133___spo 1441 CTTTTATGT-ATCGCGGTTACAAGCTGTCT----CTACGTTTTCCTTCTG 1485
BSNT_04014___ 1501 ATT---------------AAAAAAGATGAGCTTCGCCGCATTCCCATTAT 1535
||| |||||.||.||..|.|..||..||||..|..|
BL01133___spo 1486 ATTGCCTTCAAGCTGGTCAAAAAGGAAGAAATCCAGCGGTTTCCGCTGTT 1535
BSNT_04014___ 1536 CGGACGTCTG---ATCATCCGATAA- 1557
|||.|| ||| .|||| |
BL01133___spo 1536 CGGCCG-CTGGATTTCAT------AG 1554
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