Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04021 and BL01142
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:04
# Commandline: needle
# -asequence dna-align/BSNT_04021.1.5803.seq
# -bsequence dna-align/BL01142.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04021-BL01142.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04021-BL01142.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04021
# 2: BL01142
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 221
# Identity: 140/221 (63.3%)
# Similarity: 140/221 (63.3%)
# Gaps: 40/221 (18.1%)
# Score: 449.5
#
#
#=======================================
BSNT_04021 1 ATGACTGAATTTCCTAAGATCATTATGATTCTTGGTGCTGT--TTTGCTT 48
||||||||||||||.|||||..|.|||.|.||.||.||.|| ||| ||
BL01142 1 ATGACTGAATTTCCAAAGATTTTAATGGTGCTGGGCGCCGTCATTT--TT 48
BSNT_04021 49 ATTATCGGAGCAGTTT-----TGCATTTTGTCGGCAAGATGCCGGGAGAT 93
...|||| |||| ||||..|..||||||.|.|.||.||.||.
BL01142 49 GGCATCG-----GTTTATTCATGCAAGTCATCGGCAGGCTTCCCGGCGAC 93
BSNT_04021 94 ATTTTTGTAAAAAAAGGAAATGTCACGTTTTTCTTCCCGGTTGTCACTTG 143
||||||||.|||||.|||||.||.|||||||||||.||||||||.||.||
BL01142 94 ATTTTTGTGAAAAAGGGAAACGTGACGTTTTTCTTTCCGGTTGTTACATG 143
BSNT_04021 144 TATTATTATAAG------------TGTGGTATTATCAATTTTGCTTAATC 181
.|||.|.||.|| .||.||.||.|||
BL01142 144 CATTGTCATCAGCATCATTCTGTCCGTCGTGTTTTCA------------- 180
BSNT_04021 182 TT-TTTGGCAGAATGAAATAA 201
|| ||.||..|||||||||.|
BL01142 181 TTCTTCGGACGAATGAAATGA 201
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