Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01352 and BL01146
See
Amino acid alignment /
Visit
BSNT_01352 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:52
# Commandline: needle
# -asequence dna-align/BSNT_01352___sspH.1.5803.seq
# -bsequence dna-align/BL01146___sspH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01352___sspH-BL01146___sspH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01352___sspH-BL01146___sspH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01352___sspH
# 2: BL01146___sspH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 181
# Identity: 126/181 (69.6%)
# Similarity: 126/181 (69.6%)
# Gaps: 2/181 ( 1.1%)
# Score: 398.0
#
#
#=======================================
BSNT_01352___ 1 ATGAATATTCAAAGGGCGAAAGAAATTGTAGAATCTCCCGATATGAAAAA 50
.||||||..||..|.||..|.|||||.||.|||||.|||||||||....|
BL01146___ssp 1 GTGAATACGCAGCGTGCCCAGGAAATCGTCGAATCACCCGATATGGTTGA 50
BSNT_01352___ 51 AGTAACATACAACGGCGTTCCTATTTACATTCAGCACGTAAATGAAGAAA 100
.||.||.||.||||||...||.|||||.|||||||..||..|.|||.|||
BL01146___ssp 51 TGTTACTTATAACGGCAGGCCGATTTATATTCAGCGTGTCGACGAACAAA 100
BSNT_01352___ 101 CTGGAACAGCAAGAATTAATCCGCTTGACGAACCGCAAGAGGAGCATGAA 150
.||.|||.||||||||...||||||.|.|.|.|||.|..|.|||||.|||
BL01146___ssp 101 ATGAAACCGCAAGAATCTTTCCGCTCGGCCAGCCGGAGAACGAGCAGGAA 150
BSNT_01352___ 151 GTGCAGCT-GAACAGCTTAAAAGAGGATTAA 180
||||.||| |.| |..||.|||||..|||||
BL01146___ssp 151 GTGCCGCTCGCA-AATTTGAAAGAACATTAA 180
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.